Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5218 167 3e-36 seq5008 161 1e-34 seq5215 159 4e-34 seq5076 158 1e-33 seq5413 129 7e-25 seq5403 95.1 1e-14 >seq5218 Length=3038582 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| || | Sbjct 2718497 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2718438 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 2718437 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2718378 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| |||||||| | |||||||| Sbjct 2718377 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 2718318 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | || | || |||| ||||| ||||| Sbjct 2718317 ATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCGCCTTCGTGGTGG 2718271 Score = 111 bits (122), Expect = 2e-19 Identities = 244/362 (67%), Gaps = 9/362 (2%) Strand=Plus/Minus Query 80723 CGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGG 80782 |||||||||| ||||||||||||||| | || || || || | || || || || Sbjct 2802163 CGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGG 2802104 Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842 ||||||| | |||||||||||| |||| || | || ||||| | | || | Sbjct 2802103 CCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCT 2802044 Query 80843 GTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC---CTTCACAAA--TGCCGG 80897 ||| || || | ||| || | ||||| || ||| | | ||||||| || | Sbjct 2802043 TTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGCGTCACAAACATGTTGA 2801984 Query 80898 AAG-GCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 || | || || |||| |||||| || || | ||| || | | ||||||| | Sbjct 2801983 GAGCGATC---GATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGACAA 2801927 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 |||||||||||| |||| | ||||| || |||| ||| | ||||| ||| || Sbjct 2801926 TTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGT 2801867 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 |||| ||||||||| || |||||| || | || ||||| || || |||| | ||||| Sbjct 2801866 TGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGG 2801807 Query 81077 CG 81078 || Sbjct 2801806 CG 2801805 >seq5008 Length=644625 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || |||||||||||||| || || ||||| ||| Sbjct 342822 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 342881 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || ||||| | ||||| || Sbjct 342882 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 342941 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| | ||| | || |||||||| ||||| || Sbjct 342942 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGG 342988 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || |||||||| || || || ||||| ||| | Sbjct 342533 AATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTC 342592 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | ||||| || || |||||||||||||| || || ||||| || Sbjct 342593 CGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCA 342652 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || ||||| | || ||||| | ||||| || Sbjct 342653 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 342712 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | ||||| ||||| || Sbjct 342713 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGCGGAGG 342760 >seq5215 Length=2160492 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || ||||| ||||| ||| | Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| || || ||||||||| Sbjct 1797219 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| |||||||||| || ||||| | || || || Sbjct 1797159 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 1797100 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || |||||||| | || | ||||| ||||| ||| Sbjct 1797099 ATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGGA 1797052 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || || ||||| || ||||| ||||| ||| | Sbjct 1797508 AATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTC 1797449 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || ||||||| || || |||||||||||||| || || |||||||| Sbjct 1797448 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1797389 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || || || || ||||| |||||||||| || ||||| | ||||| || Sbjct 1797388 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 1797329 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| | ||||| || ||||| Sbjct 1797328 CATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 1797281 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || | || || || || || || | ||||| ||| | Sbjct 1797736 AATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCCTC 1797677 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | || || || || || ||||||||||| || || |||||||| Sbjct 1797676 CGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1797617 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || || || || ||||| |||||||||| || ||||| | ||||| || Sbjct 1797616 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 1797557 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || ||||| | ||| | ||||| || |||||| Sbjct 1797556 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGA 1797508 >seq5076 Length=596799 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || |||||||| || || || ||||||||| | Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||| || || || || || || ||| Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAG 35209 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 35210 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 35269 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | ||||| |||||||| Sbjct 35270 ATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGG 35316 >seq5413 Length=1192065 Score = 129 bits (142), Expect = 7e-25 Identities = 298/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||| |||||||| | | ||| ||||| ||||| ||||||||||| Sbjct 479826 GATAACGAGCGCTCCATTCCCAGTCTTGTGGATGGCCTGAAGCCCGGCCAGCGCAAGGTC 479885 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 || | | ||||| |||||| ||| | | || ||||||| || ||| |||| || Sbjct 479886 ATGTTCACCTGCTTCAAGAGAAACGATAAGCGAGAAGTGAAGGTAGCCCAGTTGTCCGGT 479945 Query 32074 TACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTC 32133 | ||||| ||| ||||||| |||||||| |||| || || ||| || || || Sbjct 479946 TCAGTGGCCGAGATGTCGGCCTACCACCACGGAGAGGTCTCACTGCAGATGACTATCGTG 480005 Query 32134 AACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAG 32193 || | || || |||| ||| || | || ||| | || | || |||||| || ||| Sbjct 480006 AATTTGGCACAAAACTATGTGGGCTCCAACAACATTAATCTGCTTGAGCCACGAGGTCAG 480065 Query 32194 TTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGT 32253 || || || || | | || ||||||||| || || | |||||||| ||||||| Sbjct 480066 TTCGGTACTCGCTTGACGGGAGGCAAGGATTGCGCTAGTGCTCGTTACATTTTCACCCTG 480125 Query 32254 CTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAAT 32313 | | || || | ||||| | | || || ||| || ||||| ||||| | Sbjct 480126 ATGTCCCCACTAACCAGATTGATTTACCATCCCCTTGATGATCCGCTGCTCCAGTACCAA 480185 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 |||||||| ||| | | |||||| ||| || ||| | |||| ||| | || Sbjct 480186 ACCGATGACGGGCAGAAGATTGAGCCGTTGTGGTATCTTCCTATTATTCCCATGGTTCTG 480245 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGG 32402 || |||||||| || || || || || || Sbjct 480246 GTAAACGGTGCCGAGGGTATAGGCACTGG 480274 >seq5403 Length=2915140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 295/452 (65%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 ||||| |||| || |||||||| || || ||||| ||||| || ||| Sbjct 121890 TTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTC 121949 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 || || |||||||| || ||||| || |||||||| |||||| | || || |||||| Sbjct 121950 GCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGAG 122009 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTC 64887 |||||||| ||||||| || || ||| || ||||| || ||||| || ||| Sbjct 122010 CTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTGCTGTGCTAATGTTCCAGCATCTC 122069 Query 64888 AAGGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAA 64947 | || ||| | | | || || || || | ||||| || |||||| Sbjct 122070 GTCCAGAAGCCACGTCGGGAGCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAA 122129 Query 64948 AAGGAATTCATTACTGCCGCGCTT--CCGTGTCGTCTCATCGGCATGGATGCCGATAAGA 65005 |||| ||| | || | ||| ||| ||||| | | ||||||||| | ||| || Sbjct 122130 CAGGAGTTCCTCACAGACGC-CTTGCCCGTG-AATTTGATCGGCATGAACTGCGACTTGA 122187 Query 65006 TGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTAT---TAAGC 65062 || ||| || |||||||| || || || || || || || | || | || Sbjct 122188 TGTCACAATACATCGAATTCGTTGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAA 122247 Query 65063 CCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGA 65122 |||| || | ||||| || | | ||||||| |||| ||||| ||||||| Sbjct 122248 TCTAC---AACACCAAGAATCCTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGA 122304 Query 65123 CTAACTTTTTTGAAAAGAGGGTAGGTGATTAC 65154 | ||||| |||||||||| ||| || || ||| Sbjct 122305 CCAACTTCTTTGAAAAGAAGGTGGGAGAGTAC 122336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570271191160000