Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq3253 150 7e-32 seq1069 149 3e-31 seq3205 147 9e-31 seq3602 102 3e-17 seq1480 93.3 2e-14 >seq3253 Length=25154 Score = 150 bits (166), Expect = 7e-32 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 24396 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 24455 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 24456 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 24515 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 24516 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 24575 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 24576 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 24635 Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 24636 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 24694 Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 24695 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 24751 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 24752 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 24811 Query 2996 CTGGTCAGG 3004 | || ||| Sbjct 24812 CCTGTTAGG 24820 >seq1069 Length=24382 Score = 149 bits (164), Expect = 3e-31 Identities = 281/408 (69%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 2599 ACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG---CTCT 2655 ||||||| ||||| | ||||| |||||||| || | | | ||||||||| | || Sbjct 12022 ACCAGTCGACCCATTTAAGTGTTGCCAGTTCGACCGCGTCCCTGTTTTTCCACGGCCCCT 11963 Query 2656 TACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCAT 2715 |||| || | || | ||||||||| || || ||| |||| |||| |||||||||| Sbjct 11962 GCCGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCCAGGGCGTTGTCAT 11903 Query 2716 ACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTAT 2775 | || || || ||| || || || | | || ||||| |||| | ||| | Sbjct 11902 AGGAATCCCCAACACTACCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGT 11843 Query 2776 AGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG----TGCC--AGACG 2829 || | |||||||| ||| |||| || |||||| | | || || | Sbjct 11842 AGCGAATGGACACATATTGACAGCCGCGGTCCGAATGATGGGTCACTTTTCCCTCAGGCT 11783 Query 2830 GACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT-TCCATAGAC 2888 | | || |||| ||||||||||| || ||||||| ||| |||| | | || Sbjct 11782 GCCTCTGG---CACAGAGCCTGCTCCAGGGCGTCCAGCATGAA-GTCGGTATGGGCAGTG 11727 Query 2889 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAG 2948 || ||||| ||||| ||||| || | |||||||||||||||||| || |||||||| Sbjct 11726 GACGAGACGCGCCAGCCCACAATCACGCGGGCAAACACATCAATGATGAAAGCCACATAC 11667 Query 2949 ACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 2996 || ||||||||||||||| |||||||||||||| | ||||| ||| Sbjct 11666 ACAAAGCCCTGCCATGTGGAAACGTAAGTAAAATCCGAAACCCAGAGC 11619 >seq3205 Length=14997 Score = 147 bits (162), Expect = 9e-31 Identities = 292/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 2645 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 14239 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 14298 Query 2646 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 2702 ||||| | || || | || | || | |||||| || || || || |||| || Sbjct 14299 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTATTGGTCTCCGCG 14358 Query 2703 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 2762 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 14359 AGGGCATTATCATAGGAATCTCCAACGCTTCCGTCTGAGGCAACGAGCCCCGCTTCAGCC 14418 Query 2763 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 2820 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 14419 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 14478 Query 2821 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 14479 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 14537 Query 2880 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 14538 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 14594 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 14595 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 14654 Query 2996 CTGGTCAGG 3004 | || ||| Sbjct 14655 CCTGTTAGG 14663 >seq3602 Length=57791 Score = 102 bits (112), Expect = 3e-17 Identities = 284/425 (67%), Gaps = 23/425 (5%) Strand=Plus/Plus Query 2586 CGTCGATTGTTATACCAGTCCACCCACGTTA-GTGTGGCCAGTTCCACTTCTGCACGGTT 2644 || ||||| || ||||||| ||||| ||| |||| ||||| || || || | | ||| Sbjct 32248 CGCCGATTATTGAACCAGTCGACCCAGTTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTT 32307 Query 2645 TTTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGC 2701 |||||| | || |||| || | || ||||||||| || || ||| |||| || Sbjct 32308 TTTCCATGGTCCCTGCCGGTAGATCAATTCGATTTTGTAAAGTCCGTTAATGGTCTCCGC 32367 Query 2702 CATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTT 2761 || ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 32368 CAAAGCGTTATCATAGGAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGC 32427 Query 2762 TAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG- 2820 |||| | ||| ||| | |||||||| ||| | || ||| || ||| | Sbjct 32428 CAGTCTTTGCGTGTAGCGAATGGACACATATTGACATCCGCGGTCGGAATGGTGGGTCAC 32487 Query 2821 ---TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875 | || || | | | || |||| |||||||| || |||||||||||||| || Sbjct 32488 TTTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCGAGGGCATCCAGCACGAA-GT 32543 Query 2876 CGTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCA 2930 || | || || || |||| || ||||| ||||| || | ||| || || |||||| Sbjct 32544 CGGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCGAATACATCA 32599 Query 2931 ATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACC 2990 ||||| || | | ||| || ||||||||||| ||| || || || ||||| | ||| Sbjct 32600 ATGATGAAGACGAAATAAACAAAGCCCTGCCAGGTGGAAACATACGTGAAATCCGAAACC 32659 Query 2991 CACAG 2995 ||||| Sbjct 32660 CACAG 32664 >seq1480 Length=1020 Score = 93.3 bits (102), Expect = 2e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2847 GCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCC 2906 ||||| || || || || |||||||| || ||| || | ||||| ||| ||| Sbjct 381 GCCTGTTCAAGGGCGTCGAGCACGAACTGGGTGGTCATGGAAGTCGAGACTTTCCAGCCC 322 Query 2907 ACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTG 2966 ||||| | ||| ||||||||||||| ||||| |||||||| | ||| | ||| || Sbjct 321 ACGATCCTGCGGGCGAACACATCAATGACGAACGCTACATAGACCATGCCATTCCAGGTC 262 Query 2967 CTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGG 3026 ||| || ||||| || | ||||| ||||||| || | || ||| |||||| ||| Sbjct 261 TGGACATAGGTAAAGTCCGAGACCCAGAGCTGGTTGGGGCTCTCGGCCCGGAACTGCCGG 202 Query 3027 TTTACGCGGTC 3037 || || | ||| Sbjct 201 TTGACCCTGTC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203282372815000