Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5218 143 2e-29 seq5213 134 1e-26 seq5076 134 1e-26 seq5215 131 1e-25 seq5354 91.5 1e-13 >seq5218 Length=3038582 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || |||||||| || |||||||| Sbjct 2718497 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2718438 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 2718437 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2718378 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| | ||| | || || || ||| Sbjct 2718377 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 2718318 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||||| || ||||| |||| | || ||||| Sbjct 2718317 ATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCGCCTTCGTGGTGG 2718271 >seq5213 Length=770604 Score = 134 bits (148), Expect = 1e-26 Identities = 203/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 ||||||| |||| |||| || || || || |||||||||||||| || |||||| Sbjct 538371 TGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCGCA 538430 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 |||| ||||| |||||||| | || ||| | | |||| |||| || | ||| Sbjct 538431 TGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAGACTCCTGAGCAGGCCCTGGAGTACG 538490 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTT 135653 | || | |||||||| | |||||| | || ||||| || | ||||| || || || | Sbjct 538491 CCATTCTACTTAATGATAAGTACAGTCTGGACGGACGAGACCCCAATGGTTATGTGGGGT 538550 Query 135654 GTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCA 135713 | |||||||| || | || | || || ||||||||||| || | ||||| | Sbjct 538551 GCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGATCTATCTTTGGAA 538610 Query 135714 AGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 |||| ||||| ||||||||| | || ||| | | ||||| ||||||| Sbjct 538611 AGATACGCTACATGAACTATCAAGGCTGTCGACGTAAATTCGATGTAAA 538659 >seq5076 Length=596799 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || ||||| || || |||||| | || || || || || || || | Sbjct 35088 CCATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTT 35147 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || || || || ||||||||||| || || ||||||| Sbjct 35148 CGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATC 35207 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | |||||||| || |||| || | ||| |||| || |||| Sbjct 35208 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACA 35267 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | ||| |||| | ||| |||| ||||| || Sbjct 35268 ACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGGTAT 35319 >seq5215 Length=2160492 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || || | || || | || ||||| || ||| Sbjct 1797735 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCCTCC 1797676 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| |||||| || || |||||||| || ||||| || || || || Sbjct 1797675 GATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 1797616 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | || || | ||| | ||||| |||||| Sbjct 1797615 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1797556 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 1797555 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 1797506 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || ||||| || || || || ||| Sbjct 1797507 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797448 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || ||||| || || || || Sbjct 1797447 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797388 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | || || | ||| | ||||| |||||| Sbjct 1797387 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1797328 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 1797327 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGGTAT 1797278 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || ||||| || || || || ||| Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || ||||| || || || || Sbjct 1797219 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797160 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | || || | ||| | |||||||||||| Sbjct 1797159 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 1797100 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | || ||||| | ||| |||| || || Sbjct 1797099 ATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGG 1797053 >seq5354 Length=5555046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 49824 ACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGC 49883 |||||| ||| || ||||||| ||| | ||||| ||||| ||| |||||| ||||| Sbjct 1234282 ACCCGGCAAACGAAATTGGTTAAAAGTCAAAAAGGACTATCTGTTTGATGGCAAAATGGC 1234341 Query 49884 CGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTT 49943 ||| | | || ||||| || |||| || ||||| || || ||||||||||||||| | Sbjct 1234342 CGACACGGCGGACTTGGTAGTCCTGGGAGCTTGGTATGGATCGGGAAAAAAGGGTGGCGT 1234401 Query 49944 CTTGTCTACATTTTTGATGGGATGTCTCGACACAAACCGAAACG--TTTGGACGACAGTA 50001 | | |||| | ||||| ||| ||| | || | | || |||||| ||| || Sbjct 1234402 ACTCAGCATATTTCTTATGGGGTGTTATGACTCGAA--GGATCGGCTTTGGAAGACTGTC 1234459 Query 50002 ACAAAGGTGCA 50012 || || ||||| Sbjct 1234460 ACCAAAGTGCA 1234470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888499360000