Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029026.1 Length=130952 Score E Sequences producing significant alignments: (Bits) Value seq1345 100 2e-16 seq1112 96.9 3e-15 >seq1345 Length=12888 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 121790 ATTTTAGTACCAACCATTTGCTAACCAGAAAGATTTTGCGTTCTCCCATGAGCCATAGCG 121849 || |||||||||||| | || | |||||| |||| ||| |||||| ||||| || Sbjct 8015 ATCTTAGTACCAACCGTGTGATTGCCAGAATGATTGTGCACCACTCCATGAACCATAACG 8074 Query 121850 ACCTGCTACATACTCATCAGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAA 121909 | ||| || | | ||| |||| |||||||| || ||||||||||||||||||| Sbjct 8075 TGAAGTTACGTATTGGTTAGCAACTCTATCTTGGTTAGCTTGTGAATAGTCACCATTTAA 8134 Query 121910 ATAAGAGGCAGATAGTTGGTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACC 121969 || || ||||| |||||| ||| || | |||||||| ||| || || || Sbjct 8135 GTATGACTTAGATAATTGGTACTTACCGTAGTAGTTACCATTTGAAGCAGTGTATGAGCC 8194 Query 121970 ACTAGATTCACGTTGTGCAATCCACTCTTTTGCTG 122004 || ||||||||| | ||||| |||| |||| Sbjct 8195 ACCTGATTCACGTGAAGTGATCCAAGCTTTGGCTG 8229 >seq1112 Length=42414 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 121868 AGCTACTCGTTCTTGGTTGGCAGGTGAATAGTCACCATTTAAATAAGAGGCAGATAGTTG 121927 |||||| ||||||||||| || || || |||||||||||||| || || | ||||| ||| Sbjct 24849 AGCTACCCGTTCTTGGTTAGCTGGAGAGTAGTCACCATTTAAGTATGATGAAGATAATTG 24908 Query 121928 GTAACGACCAATATACTGACCATTTGTTGCATCATAAGAACCACTAGATTCACGTTGTGC 121987 ||| |||||| |||||||||||| | ||| || || || |||||| |||||| Sbjct 24909 GTATTTACCAATGTACTGACCATTTCTGGCACTGTATGAGTTACCAGATTCCACTTGTGC 24968 Query 121988 AAT 121990 || Sbjct 24969 GAT 24971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418893519161500