Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq832 138 5e-28 >seq832 Length=33730 Score = 138 bits (152), Expect = 5e-28 Identities = 453/699 (65%), Gaps = 9/699 (1%) Strand=Plus/Minus Query 66084 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66143 || || ||||| || || || | | ||||| || ||||| || || |||| || Sbjct 19801 GATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTGGGTATTGGTGGGTTGCCC 19742 Query 66144 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66203 | ||||| ||||||||||| ||||| |||||| || || || | || || || Sbjct 19741 CGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTG 19682 Query 66204 CACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCAC 66263 || || | || | || || ||| ||||||| ||| | || || || ||||| Sbjct 19681 CATGCTATTGCAGAAGCACAAAAGCGTGGTGGCACTTGTGCTTTTATTGATGCCGAGCAT 19622 Query 66264 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66323 | ||||||| | || ||||| ||| || ||||| | || ||||| || | Sbjct 19621 GCGTTGGACCCCGGTTATGCCAAAAAGCTGGGCGTGGATGTAGATAACCTGCTGATCAGC 19562 Query 66324 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66383 ||||| || | || || ||||| |||| || | || ||||| || |||| Sbjct 19561 CAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGCAGATACACTCGTGCGATCCGGCGCT 19502 Query 66384 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 | | | | || || || ||| || || |||||||||||||| || || ||||| Sbjct 19501 ATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACTGGTGCCGCGCGCAGAACTGGAAGGA 19442 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 ||||| || || || || || ||||| || ||||| | ||| ||||| |||| ||| Sbjct 19441 GACATGGGCGATAGCCATGTTGGCCTTCATGCGCGTTTGATGAGCCAGGCTTTGCGTAAG 19382 Query 66504 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 || || || || | | || |||| || |||| | | | | |||||| | ||| | Sbjct 19381 CTTACGGGTACGGTGGCACGCTCCAATACTCTGATGATTTTCCTGAACCAGATCCGCCTG 19322 Query 66564 AAGATCG--GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGA 66621 || || | | | || | || ||| || || |||||||| || || || ||| Sbjct 19321 AAAATTGGTGTGATGTTTGGTA--ATCCG---GAAACAACCACGGGTGGTAATGCCCTGA 19267 Query 66622 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 66681 |||||| | || || || |||||| | || ||||||| || ||||| |||| Sbjct 19266 AGTTCTATTCTTCCGTGCGTATGGATATTCGCCGCATCGGGTCCATCAAGGACAAGGATG 19207 Query 66682 AGGCTGTC-GGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCAC 66740 ||| || | || || | || || || ||||| || || |||||| |||| || || | Sbjct 19206 AGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGTTAAAAACAAGATGGCGCCACCTTTC 19148 Query 66741 CGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66779 || | | || || || ||||||| || |||||| Sbjct 19147 CGTCAGGTAGAATTTGATATCATGTACGGCGAAGGCATC 19109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240943848150000