Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1218 221 1e-52 >seq1218 Length=8613 Score = 221 bits (244), Expect = 1e-52 Identities = 428/625 (68%), Gaps = 10/625 (2%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCA 126134 || |||||||| ||||| || |||||||| | ||||||| || ||||| |||| Sbjct 2097 TCAATATGATTACTGTAAATGTGAGCATCTCCTAGAGTATGAACAAAATCACCGGGCTCA 2038 Query 126135 AGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGA 126194 || || |||||||||| | | |||| | ||||||||| || || || || ||| Sbjct 2037 AGACCTACCTCTTTTGCAATTAAGTTAGTCAAAAGAGCATAACTAGCGATGTTAAACGGA 1978 Query 126195 ACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGT 126254 || || | || || || |||| | ||||| || || ||| | | ||| || || | Sbjct 1977 ACTCCAAGGAAAATGTCGCCACTCCGCTGATACAACTGGCAACTCAGTTTTCCGTCGTTA 1918 Query 126255 ACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGA 126314 |||||||||||||||||| || || || || | |||||| | || || ||| Sbjct 1917 ACGTAAAATTGAAACATTACATGACACGGAGGGAGTGCCATACTTCCAATGTCTTCTGGA 1858 Query 126315 TTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACT 126374 ||||| || ||||| |||| || | |||||| | ||||| || || || Sbjct 1857 TTCCAGGCACTTACAATCATTCGTCTTGAATCTGGATTATTCTTAATGGTTTCAATCACA 1798 Query 126375 GATTTTAATTGATCGTAATG--ATTTCCAT-TTTTATCTTCCCAATCTCTCCATTGTTTA 126431 ||| | ||| || |||| || |||| | |||| ||| | | ||| || | Sbjct 1797 TTTTTAATTTGGTC--AATGGTATCCCCATGACTGGTCTT-CCACTTACGCCACTGACTT 1741 Query 126432 CCATAAACATTCCCTAAGTTGCCATATTTTTTAGCAAATGCATCATCGTTTAGAATACGT 126491 |||||||| || | | ||||||||||||||||| ||||||| |||| || || Sbjct 1740 CCATAAACGAGGCCAAGATCCCCATATTTTTTAGCAAAGTCATCATCATTTAAAACCCGA 1681 Query 126492 TCTTTAAATTTTTTCATTTCTTCTTTATACTGCTCGTTAAATTCAGGGT--CTTGCTGGG 126549 || ||| | ||| ||| | || ||| | || ||||| | || | ||| || | Sbjct 1680 TCACAAAAGATCTTCTTTTGCTTTTGATATTCCTGATTAAACACTGGATCACTTTCT--G 1623 Query 126550 AACGATGTCCAAAATCTGTCATGTCTGGTCCATGATAATCATCAGACTGAACATAATTTT 126609 |||| | || |||| |||||||| || || ||||| |||||||| || | |||| Sbjct 1622 AACGTAGGCCGAAATTGGTCATGTCAGGGCCTTGATATTCATCAGAACTTACCCATTTTT 1563 Query 126610 CAAATGCCCATTCATTCCATATATTGTTATTATATTTAAGTAGGTATTGAATGTTTGTAT 126669 |||| |||||||||| |||||| | ||||||| || ||||||||| ||||||| |||| Sbjct 1562 CAAAGGCCCATTCATCCCATATGTGATTATTATGTTGAAGTAGGTAACGAATGTTAGTAT 1503 Query 126670 CTCCTTTAATAAACCATAATAATTC 126694 | || || | |||||| | |||||| Sbjct 1502 CACCCTTTAAAAACCAGAGTAATTC 1478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571011138500