Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5200 156 4e-33 >seq5200 Length=2197361 Score = 156 bits (172), Expect = 4e-33 Identities = 309/458 (67%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || |||||||||||||| ||||| ||||| ||| | |||||||| || || ||| Sbjct 1469013 GGTGACTTGGGCCCGGTATACGGTTTCCAATGGCGGCACTTTGGTGCTGAATATACTACC 1469072 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | || | ||||| || |||| || || ||| || | || || ||||| | Sbjct 1469073 TGTGACGATGACTACCGCGGCAAGGGCATCGATCAACTGAAGCAGGTTATTGACACGATC 1469132 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| || ||| || || | ||| | |||| |||||||| ||| ||| | || Sbjct 1469133 AAGAACAATCCTTCGGATCGACGTATCATCATGTCGGCGTGGAATCCGCTGGACATTCCA 1469192 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA------TGGG 34627 |||||| | |||||||||||| | | || || || ||| | | ||| Sbjct 1469193 AAGATGGCATTGCCCCCGTGCCACTGCTTGGCTCAGTTTTATGTCTCTCAGGAGCGTGGC 1469252 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 || || ||||||||||| ||||||||| | |||||||| || || ||||| |||||| Sbjct 1469253 GAACTCTCCTGCCAGCTGTATCAACGAAGTGCCGACATGGGCTTGGGAGTGCCCTTCAAC 1469312 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 ||||| ||||| ||| | || || ||||| ||||||||| || || ||||| Sbjct 1469313 ATTGCCTCCTACGCCCTGTTGACCTATATGATTGCTCATGTCACTGGTCTGAAGCCTGGT 1469372 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || | || || || |||| || ||||| | ||||| || ||| | |||| || | | Sbjct 1469373 GACTTTGTTCACACCATGGGAGACACGCATGTTTACCTAAATCACGTGGAGCCACTTCAG 1469432 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 || || |||| ||||| || || |||||| |||| Sbjct 1469433 GAGCAACTCGAACGCGAGCCGCGTCCCTTCCCCAAGCT 1469470 Score = 156 bits (172), Expect = 4e-33 Identities = 309/458 (67%), Gaps = 6/458 (1%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| |||||| || || ||||| |||| || || | | || |||| | ||| || Sbjct 1469470 AGCTTGGGGAAGGGACGCGGCTCGCGTTCGAGTTGCTCCTGAAGTGGCTCCACGTGATTT 1469411 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||| | ||||| || |||| || || || | || ||||| || || |||| Sbjct 1469410 AGGTAAACATGCGTGTCTCCCATGGTGTGAACAAAGTCACCAGGCTTCAGACCAGTGACA 1469351 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||| ||||| || || | ||| ||||| ||||||||||| ||||| || || ||| Sbjct 1469350 TGAGCAATCATATAGGTCAACAGGGCGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCC 1469291 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA------TTCGCGACGTAG 6733 ||||| | ||||||||| ||||||||||| || || ||| | | ||| || Sbjct 1469290 ATGTCGGCACTTCGTTGATACAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAA 1469231 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || || | | |||||||||||| | |||||| || | ||| ||| |||||| Sbjct 1469230 AACTGAGCCAAGCAGTGGCACGGGGGCAATGCCATCTTTGGAATGTCCAGCGGATTCCAC 1469171 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || |||| | ||| | || || ||| || ||| | ||||| || || | || | Sbjct 1469170 GCCGACATGATGATACGTCGATCCGAAGGATTGTTCTTGATCGTGTCAATAACCTGCTTC 1469111 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 || || || |||| || ||||| | || | ||| || || |||||| Sbjct 1469110 AGTTGATCGATGCCCTTGCCGCGGTAGTCATCGTCACAGGTAGTATATTCAGCACCAAAG 1469051 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 || | ||| ||||| ||||| |||||||||||||| || Sbjct 1469050 TGCCGCCATTGGAAACCGTATACCGGGCCCAAGTCACC 1469013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231581960000