Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5008 104 2e-17 seq5215 98.7 9e-16 >seq5008 Length=644625 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| | ||| ||| || || || || || |||| || || ||| || Sbjct 342976 CGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCG 342917 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || ||||||||||| || | ||| | || ||| ||| Sbjct 342916 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTG 342857 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || |||| || | | |||||| | ||| || |||| ||||| Sbjct 342856 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATG 342797 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || || ||||| ||||| Sbjct 342796 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | |||||| || || ||| ||| || || || || || || Sbjct 342764 CATGCCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 342705 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| |||| || ||||| ||||| || || || ||||||||||| || | Sbjct 342704 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 342645 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | | ||| |||||| ||| || |||| || | | |||||| | ||| Sbjct 342644 GGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTC 342585 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || | ||||| | || || ||||| || || || || |||||||| || Sbjct 342584 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 342531 >seq5215 Length=2160492 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || |||| || || || | || || Sbjct 1797527 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797586 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || | |||||||||||| | ||| | || ||| ||||| | Sbjct 1797587 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1797646 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||||| || | | |||||| | |||||| |||| ||||| ||||| Sbjct 1797647 ATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTT 1797706 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||| ||||| |||||||| ||||| || Sbjct 1797707 CCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1797738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||| || || || ||| ||||| || || ||||||| || || || | Sbjct 1797065 CGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCA 1797124 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || || || | |||||||||||| | ||| | || ||| ||| Sbjct 1797125 TCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 1797184 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || ||| | ||| || |||| ||||| Sbjct 1797185 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATG 1797244 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||| ||||| Sbjct 1797245 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516807021500