Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5076 114 9e-21 seq5218 113 3e-20 seq5215 91.5 1e-13 >seq5076 Length=596799 Score = 114 bits (126), Expect = 9e-21 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| ||||| ||||| | || Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||||||| | || || ||||| Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAAGAAGGTATCCCCCCCGATCA 35208 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTAC 23787 |||||| | || ||||||||||| || ||||| || | |||| |||| | || ||| Sbjct 35209 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCG--GACTAC 35266 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 35267 AACATCCAGAAGGAGTCGAC 35286 >seq5218 Length=3038582 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || |||||||| || || || | Sbjct 2718500 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2718441 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 2718440 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2718381 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | || || | || || Sbjct 2718380 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTAT 2718321 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || ||||| || || || || || Sbjct 2718320 AACATTCAGAAGGAGTCTACCTTGCACTTGGT 2718289 >seq5215 Length=2160492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || |||||||| || || || | | Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 1797219 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797160 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| || || || || || | ||||| | |||||||||| Sbjct 1797159 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 1797100 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || | || || || || | |||| |||||| Sbjct 1797099 ATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGGA 1797052 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||| | || |||||||| ||||| | || || || || Sbjct 1797738 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCC 1797679 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | || | | ||| || || ||||| || || | || ||||| Sbjct 1797678 TCCGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGAC 1797619 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||||| || || ||||| || || || || || | ||||| | ||| ||| Sbjct 1797618 CAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1797559 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 1797558 AACATCCAGAAGGAGTCGAC 1797539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986942794000