Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5215 122 2e-22 seq5076 122 2e-22 seq5218 113 1e-19 seq3202 104 6e-17 >seq5215 Length=2160492 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| ||||| |||| | || | ||||| Sbjct 1797524 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1797583 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || || || || ||||||||| Sbjct 1797584 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1797643 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || |||||||| || |||| ||||| || || ||||| || Sbjct 1797644 TGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTT 1797703 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| ||||| | || | |||||||| Sbjct 1797704 TTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1797738 >seq5076 Length=596799 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || || || || |||| ||||| || | | || | ||||| Sbjct 35301 AGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 35242 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || || ||||| || |||||||| ||||| Sbjct 35241 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCC 35182 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | || || || | ||||| ||| Sbjct 35181 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTC 35122 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 35121 TTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5218 Length=3038582 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| | || || || || || | || || || | | || Sbjct 2718276 ACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 2718335 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 2718336 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 2718395 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| ||||||||| || || | ||| || || | Sbjct 2718396 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAG 2718455 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| | || || | ||| | ||||| || Sbjct 2718456 AGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 2718500 >seq3202 Length=5929 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| |||| ||| ||||||||||||| ||||||||||| | | Sbjct 4162 TGGTAAGGTTCTTCGCGTAGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 4221 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 4222 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 4281 Query 7855 GTTAGCT 7861 ||||||| Sbjct 4282 GTTAGCT 4288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192447163817000