Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq1480 109 2e-19 >seq1480 Length=1020 Score = 109 bits (120), Expect = 2e-19 Identities = 210/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 53117 GCCAGTCGTTCGGTGTAGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATC 53176 ||||| |||||||| || ||||| | | ||||| ||| ||||| || || |||||| Sbjct 477 GCCAGGCGTTCGGTATATCGGATCGACAGATATTGTGATCCACGGTCCGAATGATGGATC 418 Query 53177 AGCCCGGCCACGTCGTGGCCGGCACGCGACCGTGCCCACAATCCCATGTTCA-GGGCGTC 53235 ||| ||| | || || ||| || ||| ||| | || |||||| ||||||| Sbjct 417 AGC---GCC---TTGTTTCCCGCAGGCTTTCGTTGCCAGATGGCC-TGTTCAAGGGCGTC 365 Query 53236 GAGGGCGAGGTCGGTGTGCATGGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAA 53295 ||| ||| | |||| ||||| |||||||| | |||||| |||| | | || | ||| Sbjct 364 GAGCACGAACTGGGTGGTCATGGAAGTCGAGACTTTCCAGCCCACGATCCTGCGGGCGAA 305 Query 53296 CACGTCCAGGACGAACGCCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTC 53355 ||| || | ||||||||| | || ||| ||| ||| ||| ||||| | ||| Sbjct 304 CACATCAATGACGAACGCTACATAGACCATGCCATTCCAGGTCTGGACATAGGTAAAGTC 245 Query 53356 CGCCACCCACAACGCGTTCGGTGCCGCCGCGGTGAACTGACGGTTGACCCGGTCAGCCGG 53415 || ||||| | | ||| || | | || |||||| |||||||||| |||| | || Sbjct 244 CGAGACCCAGAGCTGGTTGGGGCTCTCGGCCCGGAACTGCCGGTTGACCCTGTCATCGGG 185 Query 53416 CCGGGG 53421 | ||| Sbjct 184 ACAGGG 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175834915032000