Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5218 592 2e-164 >seq5218 Length=3038582 Score = 592 bits (656), Expect = 2e-164 Identities = 1270/1878 (68%), Gaps = 36/1878 (2%) Strand=Plus/Minus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| || | ||||||||||| | | || || ||||| || | |||||||| Sbjct 2802896 TTCTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATT 2802837 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || ||||| ||||| |||| ||||||||| ||| ||| || || ||| | Sbjct 2802836 CCGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTT 2802777 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || | ||| ||||| | ||||| || ||||| || || || || | ||| || Sbjct 2802776 GGCTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCG 2802717 Query 76950 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 |||||||| || | | || |||| |||||||||| |||||| ||| | | || Sbjct 2802716 GCCATTTTAATTGTTGATTTAACTGAG--ATTTCCCAAACTGTTTTGTAAAGGTCTCGGA 2802659 Query 77008 TATCATCTGGAAG-GTTTG--TATTTTGAATGGAACCACCATCTG-ATATAATTGTATTC 77063 | | ||||| | || ||||||||||||| || || ||| |||| || |||| Sbjct 2802658 CCTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTC 2802600 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || || ||||| | |||||| | | ||| || ||| | || || | |||| | || || Sbjct 2802599 TTCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACC 2802540 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 | ||| || || ||||| | ||| | | || |||||||| | ||||| || || | Sbjct 2802539 ACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAG 2802480 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 ||||| || || |||| |||||||||||| || || || ||||| || |||||||| | Sbjct 2802479 GATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGG 2802420 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 ||||| | |||||| || |||| || || ||| |||||| |||||||||||| Sbjct 2802419 GAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCT 2802360 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | || |||||| | ||||| || |||||||| ||||| | ||| | | Sbjct 2802359 GTCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCA 2802300 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 || |||||||| | || || ||| || ||||| ||||| ||||||| ||||| | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| ||||| || |||| | || | || || || || || || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATA 2802181 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | |||||| | || || || | |||||||| || || |||||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 |||||| | || || || || | || ||| | || || ||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTA- 77661 ||||| | || || || ||||| || || || ||| || || ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTGG 2802001 Query 77662 --TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTT 77719 | ||||||||||| | ||| || ||||| | ||| |||||||| | ||| | | Sbjct 2802000 CGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGA 2801941 Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 | || | | || || || || |||||||| ||||| || ||||||| || ||||| Sbjct 2801940 AGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTG 2801881 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 |||||||||| ||||| | |||||| | || || | ||| | || || || | || Sbjct 2801880 GTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTG 2801821 Query 77840 TGATTCGATAATAGATTTCCAGACG-ACTCTAGCTTTTATCA--TAGATTTGTATCGCCT 77896 || || || || | ||| | | ||| | ||||||| || | | |||| ||| | Sbjct 2801820 CGACTCAATGATGGCGAACCACAAGGACTGT-GCTTTTA-CAGTTCGGTTTG---CGCGT 2801766 Query 77897 CTCTCTT--TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | ||| | || |||| ||||||| |||||| ||||| ||||| ||||||| | | Sbjct 2801765 CCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGT 2801706 Query 77955 CCAGGGCATTCATTTGGGCACATCAATG--ACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 |||||||||| | |||| ||| || | ||||||| ||| ||| |||||||||| Sbjct 2801705 CCAGGGCATT--TGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCA 2801648 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | |||||||| |||||||| || ||| || | ||| |||| || ||| ||||| || | Sbjct 2801647 TGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGC 2801588 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | |||||||| ||||| || |||||||| | || ||| |||||||| || |||||||| | Sbjct 2801587 CAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAA 2801528 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | |||| || || || ||| |||||||| | ||||| || ||| ||| Sbjct 2801527 TGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAA 2801468 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | ||||||| ||| |||| | ||| || || || || || ||||| |||| || | | Sbjct 2801467 AGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTAC 2801408 Query 78253 CACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATT 78308 | |||| |||||| |||||| || || || || ||||| ||| || || Sbjct 2801407 CCTTTGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATC 2801352 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | ||||| | | | || | | |||||||||| || ||| ||||| | || Sbjct 2801351 ATGGCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGG 2801292 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 |||||||| || | || || || || | || ||||| || || || || Sbjct 2801291 AGAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCG 2801232 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 ||||| || | || ||||| | ||||| || || | || | || ||||| | Sbjct 2801231 TGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCT 2801172 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 ||| ||||| | || || ||||| | ||| ||||| |||| || | | ||| | Sbjct 2801171 CCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCA 2801112 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || ||||| | | ||| || |||| ||| || || ||||| |||||||| |||| Sbjct 2801111 TTGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAG 2801052 Query 78609 TCTCTCTCGTAAATAATA 78626 || | || ||||| ||| Sbjct 2801051 TCACGATCATAAATTATA 2801034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694621041520000