Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5218 556 2e-153 seq5403 150 3e-31 >seq5218 Length=3038582 Score = 556 bits (616), Expect = 2e-153 Identities = 1260/1881 (67%), Gaps = 20/1881 (1%) Strand=Plus/Minus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| || | || |||||||||| || ||||| ||||| || | |||||||| Sbjct 2802896 TTCTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATT 2802837 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| ||||| |||| ||||||||| ||| ||| || || ||| | Sbjct 2802836 CCGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTT 2802777 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || | ||| ||||| | ||||| || ||||| || || || || | ||| || Sbjct 2802776 GGCTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCG 2802717 Query 75545 GCCATTTTTATAATGGTCTTT--TGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 |||||||| || | | || |||| |||||||||| |||||| ||| | | || Sbjct 2802716 GCCATTTTAATTGTTGATTTAACTGAG--ATTTCCCAAACTGTTTTGTAAAGGTCTCGGA 2802659 Query 75603 TATCATCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCT 75659 | | ||||| |||| |||||||||||||||| | ||||| || ||||| Sbjct 2802658 CCTTTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCT 2802599 Query 75660 TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 | || ||||| | |||||| | ||| || ||| | || || | |||| | || || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 ||| || || ||||| | ||| | || || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 |||| || || |||| |||||||||||| || || || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 ||||| | |||||| || |||| || || ||| |||||| ||||||||||||| Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 || |||||| | ||||| || |||||||| || || | ||| | || Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCAT 2802299 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 | ||||| || || |||||| ||| || ||||||||||| || || | || || | | Sbjct 2802298 AAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGT 2802239 Query 76020 AAATTGTTTCGAAAATCT-TCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 |||| ||||| || |||| | |||||| || || || || || | |||||| Sbjct 2802238 AAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATAA 2802180 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | |||||| | || || || || |||||||| || || |||||||| | ||| || Sbjct 2802179 CGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTT 2802120 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 |||||| | | || || || | |||||| | || |||||||| || |||||||| Sbjct 2802119 AAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGG 2802060 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT--- 76255 |||||| | || || || ||||| || || || ||| || || ||| Sbjct 2802059 TTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGC 2802000 Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 |||||||||| || ||||| || ||||| | ||| ||||| || | ||| | | Sbjct 2801999 GTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAA 2801940 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | || | | || |||||||| |||||||| || || || || || | || |||||| Sbjct 2801939 GAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGG 2801880 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 ||||||||| ||| || | |||||| | || | | ||| | ||||| || | || Sbjct 2801879 TTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGC 2801820 Query 76436 GATTCGATAATAGATTTCCA-GACGACTCTAGCTTTTA-TTATAGATTTGTATCGCTTCT 76493 || || || || | ||| | |||| | ||||||| | | |||| ||| || Sbjct 2801819 GACTCAATGATGGCGAACCACAAGGACTGT-GCTTTTACAGTTCGGTTTG---CGCGTCC 2801764 Query 76494 CTC--TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| ||| |||| ||||| | |||||| ||||| ||||| ||||||| | || Sbjct 2801763 CTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||| | ||||| | | ||||| || ||| ||| || |||||||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||| |||||||| || ||| || | ||| |||| || | | ||||| || || || Sbjct 2801643 GAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGT 2801584 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 |||||| ||||| || || ||||| | || ||| |||||||| || |||||||| || || Sbjct 2801583 ATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGC 2801524 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | ||||| || || ||| |||||||| | ||||| || ||| ||| | || Sbjct 2801523 AAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGAC 2801464 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 ||||| ||| |||| | || || || || || || ||||| |||| || | || Sbjct 2801463 TCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTT 2801404 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 |||||||||| | | | || || || || ||||| || ||||| | || || Sbjct 2801403 TGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGGCGCA 2801344 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 | | | || | |||| ||||| || || ||||| | || |||||||| Sbjct 2801343 TTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAAAACA 2801284 Query 76972 GCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 || | || || || || | || ||| | || || || || || ||||| Sbjct 2801283 AGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCGTGAA 2801224 Query 77032 CCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 | || ||||| | ||||| || || | | || || || || | ||| || Sbjct 2801223 ATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCATGGAT 2801164 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 ||| | || || ||||| | ||| ||||| ||||| || | | ||| ||| ||||| Sbjct 2801163 TCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATTGATTTT 2801104 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 | | ||| || |||| ||| || || ||||| |||||||| |||||| | || Sbjct 2801103 AAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTCACGATC 2801044 Query 77212 GTAAATAATAACCGAATTTAG 77232 ||||| ||| ||| || || Sbjct 2801043 ATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 150 bits (166), Expect = 3e-31 Identities = 467/716 (65%), Gaps = 9/716 (1%) Strand=Plus/Minus Query 46465 TCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACC 46524 || ||||||||||| || || | ||||| || || ||||| || || | || || Sbjct 122215 TCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATTCACG 122156 Query 46525 GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC--GATATTATCGATG 46582 || | || || || || ||||| |||||||| ||||| || ||| | |||||| Sbjct 122155 GGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCGATG 122096 Query 46583 TTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAA-ACATGCAAAATCA 46641 | | | || || ||| || | | ||| | ||||||| ||| ||||| || Sbjct 122095 ATGCGCT--CCCGACGTGGCTTCTGGACGAGATGCTGGAACATTAGCACA-GCAAAGTCG 122039 Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701 || ||||||||||| || || || | ||||| || || || || |||||||| || Sbjct 122038 CAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGA 121979 Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761 || ||||| || ||||| || || | ||||| || ||||| || || ||||| Sbjct 121978 CCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTACG 121919 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTGA 46818 || || || |||| | | |||||| | ||||| || | || ||||| | Sbjct 121918 GCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATCCAGGCCAGC 121859 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||| ||||| ||| || ||||| ||||| || ||||| || || | | Sbjct 121858 GCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAACAGGTACTCG 121799 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 | | |||| ||| || || || || | | ||| ||||| || || || | | Sbjct 121798 CGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTGTACG 121739 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 ||||| || || || || || || |||||||| | || || || | ||| ||||| | Sbjct 121738 TTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGAACCTCCTGA 121679 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | || || ||| || |||||| || || |||||||| ||||||||| || |||| Sbjct 121678 CTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAGAAGGCCAGC 121619 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || || || | ||||||| | || | ||| || | | ||| || Sbjct 121618 ACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTAAGATCCTTG 121559 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 || | || || || || |||||||||| || || || || ||| ||| | ||| Sbjct 121558 GAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAAATAAAAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712885385760000