Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq995 104 5e-18 >seq995 Length=30878 Score = 104 bits (114), Expect = 5e-18 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 27368 ATGATTAATTCAACCGTACTTGTTGGACGTCTAACTAAAGACCCAGAACTTAAATACACA 27427 ||||||||| || || ||| |||||| |||| |||| || | |||||| Sbjct 6833 ATGATTAATACAGTAGTTCTTACTGGACGCTTAACACGAGACGTTGATTTGCGATACACC 6892 Query 27428 CAAAGCAATATCGC---AGTAGCATCTTTTAGCCTTGCGGTTAACCGTAACTTTAAGGAT 27484 |||| || ||| ||| | |||||| ||| || ||| ||||| || | || Sbjct 6893 CAAA---ATGGCGCGGCAGTTGGTACTTTTACCCTAGCTGTTGACCGTCGTTTCACCAAT 6949 Query 27485 GCTAATGGTGAGCGTGAAGCAGATTTTATCAATTGCGTTATCTGGCGCCAGCAAGCTGAA 27544 | |||||||| || ||||| || || |||| || ||||| ||||| | ||||||| Sbjct 6950 TCGAATGGTGATCGGGAAGCTGACTTCGTCAACTGTGTTATTTGGCGAAAATCAGCTGAA 7009 Query 27545 AATTTGGCTAATTGGGCTAAAAAAGGCGCATTGATTGGAATTACTGGACGTATTCAGACC 27604 || || || || | | | || || || | ||||||| || || ||||||||| Sbjct 7010 AACTTTGCCAACTTCGTGCATAAGGGTTCACTTGTTGGAATCGAAGGTCGGATTCAGACC 7069 Query 27605 CGTAGCTATGAAAACCAACAAGGGCAACGAGTGTATGTGACAGAGGTAGTCGCTGAGAAC 27664 || | || || ||| | || || |||||||| ||||| || || ||||| | ||||||| Sbjct 7070 CGAAATTACGAGAACAAGCAGGGCCAACGAGTTTATGTTACCGAAGTAGTTGTTGAGAAC 7129 Query 27665 TT 27666 || Sbjct 7130 TT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105807488997000