Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1344 185 6e-42 >seq1344 Length=8683 Score = 185 bits (204), Expect = 6e-42 Identities = 461/688 (67%), Gaps = 44/688 (6%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 6449 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 6390 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 6389 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 6330 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 6329 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 6270 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 6269 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 6210 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 6209 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 6150 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 6149 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 6096 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 6095 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 6043 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 6042 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 5987 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 5986 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 5927 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 5926 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 5868 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT----C 59366 ||| |||| || |||||| || |||||||||| |||| | || |||| | | Sbjct 5867 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAGC 5812 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGAC 59394 ||||| | ||||| |||| |||||| Sbjct 5811 CCGGCATATTGCCGTATTTCGCGTTGAC 5784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330877019413000