Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5215 122 2e-22 seq5218 109 1e-18 seq5076 105 2e-17 seq5008 95.1 3e-14 >seq5215 Length=2160492 Score = 122 bits (134), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| ||||||||||||||||||| | || | ||||| || | Sbjct 1797073 CAAG-TGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGA 1797131 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | | ||||||||| | | ||| || ||||| || || Sbjct 1797132 GCTGCTTT--CCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 1797189 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || || |||| | | |||| ||| ||| || || ||||| || || || Sbjct 1797190 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTT 1797249 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||||||||||| |||||| Sbjct 1797250 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 109 bits (120), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 1797295 GAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 1797354 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| | | ||||||||| | | ||| || ||||| Sbjct 1797355 CTCGAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 1797412 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || || |||| | | |||| ||| ||| || || ||||| || Sbjct 1797413 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATG 1797472 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | ||||||||||||| ||||||| Sbjct 1797473 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 1797508 Score = 109 bits (120), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || ||||||||||| |||| | || | ||||| Sbjct 1797523 GAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 1797582 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| | | ||||||||| | | ||| || ||||| Sbjct 1797583 CTCGAGCTGCTTT--CCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 1797640 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || |||||| |||| | | | || || ||| || || | || || Sbjct 1797641 TCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATG 1797700 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || | || ||||| |||| ||||||||| Sbjct 1797701 GTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1797738 >seq5218 Length=3038582 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 |||||||| || || ||||| || || | | || | |||||||| || || || Sbjct 2718301 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCA 2718360 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | |||||| || | | |||||||| || || ||||| || |||| Sbjct 2718361 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2718420 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | || || || || |||||||| || || ||||||||||| ||| Sbjct 2718421 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2718480 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||||| |||||| || Sbjct 2718481 TTAACGAAGATCTGCATCTT 2718500 >seq5076 Length=596799 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || || ||||| || ||||||||||| || | | || | ||||| Sbjct 35302 GAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 35243 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| ||||| || | |||||| || | | ||| ||||| || || Sbjct 35242 CTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTC 35183 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | |||| ||| ||| || || || || || || Sbjct 35182 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGT 35123 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || |||||||||| ||||| Sbjct 35122 CTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5008 Length=644625 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||||||||| |||| | || | Sbjct 342752 GAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 342693 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | |||||| || | | ||| || || Sbjct 342692 TCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTC 342633 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| |||| | | | || || ||| || || || || Sbjct 342632 CTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGT 342573 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||||||||| | |||||||| Sbjct 342572 GATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 342531 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| ||||| || ||||||||||| |||| | || | || || || || Sbjct 342965 ATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 342906 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| || | |||||| || | | ||| || ||||| || || || || Sbjct 342905 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 342846 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| |||| | | | || || ||| || || || || || || ||||| || Sbjct 342845 GGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGT 342786 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 342785 CAGGGTCTTGACGAAGATCTGCAT 342762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153739491690500