Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031915.1 Length=37395 Score E Sequences producing significant alignments: (Bits) Value seq995 89.7 1e-13 >seq995 Length=30878 Score = 89.7 bits (98), Expect = 1e-13 Identities = 198/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 28914 CAACAACTTCTGTGACATAAACACGTTGACCTTGCTGGTTATCATAGCTACGTGTTTGAA 28973 |||| ||||| || |||||||| ||||| || |||| ||| || || | || || |||| Sbjct 7121 CAACTACTTCGGTAACATAAACTCGTTGGCCCTGCTTGTTCTCGTAATTTCGGGTCTGAA 7062 Query 28974 TTACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGCCCAATTAACAAGATTTTCAGCTG 29033 | ||| | ||| | ||| || || || | | | || ||| |||||||||| Sbjct 7061 TCCGACCTTCGATTCCAACAAGTGAACCCTTATGCACGAAGTTGGCAAAGTTTTCAGCTG 7002 Query 29034 ACTGTCTCCAGATAACGCAATTGATAAAATCAGCCTCACGCTCTCCAGCCTCGTTCTTAA 29093 | | || ||| ||||| || |||| || ||||| || || || ||| | || | | Sbjct 7001 ATTTTCGCCAAATAACACAGTTGACGAAGTCAGCTTCCCGATCACCATTCGAATTGGTGA 6942 Query 29094 ATGGACGGTTTACAGCAAGAGTAAACGTAGCAA---CCGCAATATTAGATTGCGTGTATC 29150 | |||||| ||||| || ||||| ||| ||| |||| ||| ||| ||||||| Sbjct 6941 AACGACGGTCAACAGCTAGGGTAAAAGTACCAACTGCCGCGCCATT---TTGGGTGTATC 6885 Query 29151 TCAGTTCGGCATCTCTTGTAAGTCGCCCTACTAA-AACAACGTTATTTATCAT 29202 || || | |||| ||| | || || | ||| ||| || |||| ||||| Sbjct 6884 GCAAATCAACGTCTCGTGTTAAGCGTCC-AGTAAGAACTACTGTATTAATCAT 6833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119534592387000