Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3213 89.7 6e-13 seq1517 84.2 3e-11 >seq3213 Length=8410 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 1944 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 1886 >seq1517 Length=89391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 38247 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 38188 Query 17764 GTCCCTTCAGTCCCGTATGCCACTTTA 17790 | ||| ||| || | ||||||||| Sbjct 38187 GCCCCGTCACTCGC----GCCACTTTA 38165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596266203880000