Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5215 158 9e-34 seq5008 152 4e-32 seq5076 143 2e-29 seq5218 118 8e-22 >seq5215 Length=2160492 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||| |||||| || ||||||||||||||||||||||| Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| ||| | || || |||||||| ||||| ||||||||||||||||| |||| || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| |||| | |||| | |||||||||| | || | Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGAAGGCTCGA 1797230 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || || ||||| || || | ||||||||||||||| ||||| Sbjct 1797231 CCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 141 bits (156), Expect = 7e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| |||| ||| ||| | || || Sbjct 1797299 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797358 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||||||||||||| |||| || | || ||||| ||| Sbjct 1797359 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1797418 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | |||||||||| | || ||||||| || || ||||| Sbjct 1797419 ATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTT 1797477 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||| ||||| Sbjct 1797478 ACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | |||| |||||| || |||||| ||||||||||| || Sbjct 1797505 CATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 1797564 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || || |||||||| ||||| ||||||||||||||||| |||| Sbjct 1797565 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGG 1797624 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | |||| | ||||| |||| || | Sbjct 1797625 GGGGATGCCCTCCTTGTCTTGGATCTT-GGCTTTGACGTTCTCGATGGTATCGGAGGGCT 1797683 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || || ||||| || | ||| ||||| ||||| ||||| Sbjct 1797684 CCACCTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 >seq5008 Length=644625 Score = 152 bits (168), Expect = 4e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 342743 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 342684 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||||||||| || | ||| ||||| ||| Sbjct 342683 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTG 342624 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | |||| | ||||| |||| || || ||||| | || || |||| Sbjct 342623 GATCTTGGCCTTGAC-GTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCT 342565 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||||||||| |||||||| Sbjct 342564 TGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||| || | ||| |||||| ||||||||||| |||| Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| ||||| ||||||| |||||||||||||| || Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| || | | |||| | ||||| |||| || || || Sbjct 342868 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGAC 342810 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || || |||||||| |||||||| |||||| Sbjct 342809 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 342761 >seq5076 Length=596799 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || || || |||||| ||||||||||| || | || ||| | || || Sbjct 35299 CACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTC 35240 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||||||||||| |||||||||||| | || | |||||| || ||| Sbjct 35239 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCCTG 35180 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | |||||||| | | || ||||| | || || ||||| Sbjct 35179 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTCTT 35120 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || |||||||| |||||||||||||||||| || Sbjct 35119 GCCAGTGAGGGTTTTCACGAAGATTTGCATGGTG 35086 >seq5218 Length=3038582 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| | || |||||| || ||||| || || | ||| || | || Sbjct 2718285 CAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATC 2718344 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| || || ||||||| |||||||||||||| ||| | ||||| || || Sbjct 2718345 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 2718404 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| || | || | ||||| || | | ||| ||||| | || || || Sbjct 2718405 CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGT 2718464 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||||||||| |||||||| ||||| Sbjct 2718465 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966269393500