Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5076 165 2e-35 seq5215 156 1e-32 seq5008 156 1e-32 seq5218 145 2e-29 >seq5076 Length=596799 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| ||||| || || || |||||||||||||| || || ||| Sbjct 35093 CAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCGGAC 35152 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||||||||| ||||| || || ||||| Sbjct 35153 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAGCAG 35212 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || ||| | || || ||| || Sbjct 35213 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAACATC 35272 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 35273 CAGAAGGAGTCGACCCTGCATCTGGT 35298 >seq5215 Length=2160492 Score = 156 bits (172), Expect = 1e-32 Identities = 164/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| | || |||||||| |||||| | |||||||| Sbjct 1797738 AAAATGC---AGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAG 1797682 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || |||||||||||||||||| ||||| || ||||| || || ||||| || Sbjct 1797681 CCCTCCGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCA 1797622 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || | |||||||||||||| |||||||| ||||| | || || |||| Sbjct 1797621 GACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGAC 1797562 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || || || |||| Sbjct 1797561 TACAACATCCAGAAGGAGTCGACCCTTCA-CTTG 1797529 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || ||||| || || ||| Sbjct 1797276 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCCGAC 1797217 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 1797216 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 1797157 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| |||||||| ||||| | || || ||||||| ||| || Sbjct 1797156 CGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATC 1797097 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 1797096 CAAAAGGAGTCAACTCTTCA-CTTG 1797073 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||| || ||||| || || ||| Sbjct 1797504 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCCGAC 1797445 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 1797444 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 1797385 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| |||||||| ||||| | || || |||| || ||| || Sbjct 1797384 CGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 1797325 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 1797324 CAGAAGGAGTCGACCCTCCA-CTTG 1797301 >seq5008 Length=644625 Score = 156 bits (172), Expect = 1e-32 Identities = 164/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||||||||| || || || || || || |||||||||||||| || Sbjct 342531 AAAATGC---AAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAG 342587 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || ||||||||||||||||| ||||| |||||||| || || ||||| || Sbjct 342588 CCCTCCGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCA 342647 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || || ||| | || || |||| Sbjct 342648 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 342707 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || || || |||| Sbjct 342708 TACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 342740 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||| || Sbjct 342765 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCCGAT 342824 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 342825 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAG 342884 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || ||| | || || |||| || ||| || Sbjct 342885 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAACATC 342944 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || ||||| | || ||| Sbjct 342945 CAGAAGGAGTCCACTTTGCATTTGGTGTTG 342974 >seq5218 Length=3038582 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 2718494 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 2718435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 2718434 ACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 2718375 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || |||||| | Sbjct 2718374 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAACATT 2718315 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 2718314 CAGAAGGAGTCTACCTTGCA-CTTG 2718291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203646374567000