Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 7e-15
seq4 93.3 9e-14
seq2 91.5 3e-13
>seq1
Length=33300182
Score = 96.9 bits (106), Expect = 7e-15
Identities = 169/244 (69%), Gaps = 8/244 (3%)
Strand=Plus/Minus
Query 61254 TTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCG 61313
||||||||||||||||| | ||| | | |||||||| || |||||||| |
Sbjct 4445193 TTCAATCACGAGAGTCCACGCCGTGGTGAAAACTTTGTGACACGCAAAATTACACGCTCT 4445134
Query 61314 GTTGCAAATATTTT--TAACGGTGTCGAAA--AATGCATGTATCTAGGAAACATAGACTC 61369
|||||||| ||| | ||| || || ||| | | || || || | |||||
Sbjct 4445133 GTTGCAAAGATTCTGCTAAA----TCAAATGGAATATTTTGAGCTGGGCAATTTGGACTC 4445078
Query 61370 TAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACA 61429
|| | |||||||| |||| |||| ||| | ||||| |||||| ||||| |||| |
Sbjct 4445077 GAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAGGCCATGTGGATGATGCTGCAGCG 4445018
Query 61430 AGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489
||| || | ||| || || ||||||||||| ||||| ||||| |||||||| ||
Sbjct 4445017 CGATGAGCCGGCTGATTATGTGATTGCGACTGGTGAGACGCACAGTGTGCGTGAATTTGT 4444958
Query 61490 AAAA 61493
| ||
Sbjct 4444957 AGAA 4444954
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 1510587 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1510646
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1510647 CCCCACGTTGGGC 1510659
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 1513717 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1513776
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1513777 CCCCACGTTGGGC 1513789
>seq4
Length=26871514
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 25768578 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 25768519
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 25768518 GCCCCACGTTGGGC 25768505
>seq2
Length=22510139
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 11429030 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11429089
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 11429090 CCCCACGTTGGGC 11429102
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 11429441 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11429500
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 11429501 CCCCACGTTGGGC 11429513
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 20384771 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 20384712
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 20384711 CCCCACGTTGGGC 20384699
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 500129 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 500070
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 500069 CCCACGTTGGGC 500058
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 18893645 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18893704
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 18893705 CCCACGTTGGGC 18893716
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 20402823 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20402764
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 20402763 CCCACGTTGGGC 20402752
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 20403077 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20403136
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 20403137 CCCACGTTGGGC 20403148
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 21464551 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 21464610
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 21464611 CCCACGTTGGGC 21464622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823918679780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |