Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 7e-15 seq4 93.3 9e-14 seq2 91.5 3e-13 >seq1 Length=33300182 Score = 96.9 bits (106), Expect = 7e-15 Identities = 169/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 61254 TTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCG 61313 ||||||||||||||||| | ||| | | |||||||| || |||||||| | Sbjct 4445193 TTCAATCACGAGAGTCCACGCCGTGGTGAAAACTTTGTGACACGCAAAATTACACGCTCT 4445134 Query 61314 GTTGCAAATATTTT--TAACGGTGTCGAAA--AATGCATGTATCTAGGAAACATAGACTC 61369 |||||||| ||| | ||| || || ||| | | || || || | ||||| Sbjct 4445133 GTTGCAAAGATTCTGCTAAA----TCAAATGGAATATTTTGAGCTGGGCAATTTGGACTC 4445078 Query 61370 TAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACA 61429 || | |||||||| |||| |||| ||| | ||||| |||||| ||||| |||| | Sbjct 4445077 GAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAGGCCATGTGGATGATGCTGCAGCG 4445018 Query 61430 AGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 ||| || | ||| || || ||||||||||| ||||| ||||| |||||||| || Sbjct 4445017 CGATGAGCCGGCTGATTATGTGATTGCGACTGGTGAGACGCACAGTGTGCGTGAATTTGT 4444958 Query 61490 AAAA 61493 | || Sbjct 4444957 AGAA 4444954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1510587 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1510646 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1510647 CCCCACGTTGGGC 1510659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1513717 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1513776 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1513777 CCCCACGTTGGGC 1513789 >seq4 Length=26871514 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 25768578 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 25768519 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 25768518 GCCCCACGTTGGGC 25768505 >seq2 Length=22510139 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 11429030 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11429089 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 11429090 CCCCACGTTGGGC 11429102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 11429441 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 11429500 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 11429501 CCCCACGTTGGGC 11429513 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 20384771 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 20384712 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 20384711 CCCCACGTTGGGC 20384699 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 500129 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 500070 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 500069 CCCACGTTGGGC 500058 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 18893645 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18893704 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18893705 CCCACGTTGGGC 18893716 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 20402823 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20402764 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20402763 CCCACGTTGGGC 20402752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 20403077 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20403136 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20403137 CCCACGTTGGGC 20403148 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 21464551 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 21464610 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21464611 CCCACGTTGGGC 21464622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823918679780