Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 >seq2 Length=22510139 Score = 96.9 bits (106), Expect = 4e-15 Identities = 352/538 (65%), Gaps = 16/538 (3%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAA-TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGA 17013 ||||||| ||| | ||| || || || || ||||| || | ||| || || || || Sbjct 3319022 AACATCA-ACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGA 3318964 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073 || ||||| || ||||| || || ||||||| ||| || || | |||||| || Sbjct 3318963 GAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCC 3318904 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC 17133 |||||| || ||||| |||| || || || || | || ||| | | | || | Sbjct 3318903 GCTAAAGAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGC 3318844 Query 17134 TTTGTTACGA-ATCCAT--TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATC 17188 ||| | || |||||| | ||| ||| || || || |||| | || | ||| Sbjct 3318843 CTTGG-AGGATATCCATGATAATGC--CCAGTCAGCCTTGCGCTTCA--CAGCCGGCATT 3318789 Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248 ||||| || || || || | | || | || | || | ||||||||| ||| Sbjct 3318788 GTTTCAATTGCATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATG 3318729 Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || | || ||||| || ||||| | |||||||| || ||||| ||||| |||||||| Sbjct 3318728 AGCACACTATACATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAG 3318669 Query 17309 CGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGA 17366 || || || | ||| || ||||| || || || || || | || || || || || | Sbjct 3318668 CGTGCCTCTGTTATCTGCACTTCTTGAC-TA-AAGCGCTCAACCAGGTTCTCATTGACAA 3318611 Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG 17426 |||| || || |||||||| ||||| | ||| ||| || | || | || Sbjct 3318610 TGCCATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTG 3318551 Query 17427 TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 ||||| |||||| | | || || || | |||||||||||| |||||||| Sbjct 3318550 TAAGACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/267 (69%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 |||||||| || ||||| || || | || ||| || ||||| || || || | || Sbjct 17628924 TTCATATAGCGAATCTTACCAAAGATGGCACGCTCTTTCCAACCTTGATCATGTATGCCG 17628865 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| ||||| || || || ||||| ||||| | ||| ||||| Sbjct 17628864 CCGATGGACCACATGCAGCCCACATAACCATTAGGATCACGACCATCGAGACTA-TATTT 17628806 Query 119902 ATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||| || | | ||| || || | || || | |||||||||| |||| || || | Sbjct 17628805 ATCATTAAGCAATATAGCATACTCCAAAGCCAGCT-CAGGAGTCTCAGTCCACTCAAGAA 17628747 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 |||| || ||||| ||||| ||||| | ||||||||||| || || | || | || | Sbjct 17628746 TTTTCTTGGCCCAATACATGCGTAAAAAGCCATGCATTTTGCCCTCCTGCACAAGCTGCA 17628687 Query 120021 GTTGTGCGGCGTTCCATAAGGGATCGT 120047 | || || | |||||||| |||||| Sbjct 17628686 GCTGCGCCGAGTTCCATA---GATCGT 17628663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545561184080