Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 4e-15
>seq2
Length=22510139
Score = 96.9 bits (106), Expect = 4e-15
Identities = 352/538 (65%), Gaps = 16/538 (3%)
Strand=Plus/Minus
Query 16955 AACATCAGACATGCGAAA-TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGA 17013
||||||| ||| | ||| || || || || ||||| || | ||| || || || ||
Sbjct 3319022 AACATCA-ACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGA 3318964
Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073
|| ||||| || ||||| || || ||||||| ||| || || | |||||| ||
Sbjct 3318963 GAAGGTCAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCC 3318904
Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC 17133
|||||| || ||||| |||| || || || || | || ||| | | | || |
Sbjct 3318903 GCTAAAGAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGC 3318844
Query 17134 TTTGTTACGA-ATCCAT--TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATC 17188
||| | || |||||| | ||| ||| || || || |||| | || | |||
Sbjct 3318843 CTTGG-AGGATATCCATGATAATGC--CCAGTCAGCCTTGCGCTTCA--CAGCCGGCATT 3318789
Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248
||||| || || || || | | || | || | || | ||||||||| |||
Sbjct 3318788 GTTTCAATTGCATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATG 3318729
Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308
|| | || ||||| || ||||| | |||||||| || ||||| ||||| ||||||||
Sbjct 3318728 AGCACACTATACATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAG 3318669
Query 17309 CGGGCTTCCGCTATTTGAACTTCC--ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGA 17366
|| || || | ||| || ||||| || || || || || | || || || || || |
Sbjct 3318668 CGTGCCTCTGTTATCTGCACTTCTTGAC-TA-AAGCGCTCAACCAGGTTCTCATTGACAA 3318611
Query 17367 TGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG 17426
|||| || || |||||||| ||||| | ||| ||| || | || | ||
Sbjct 3318610 TGCCATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTG 3318551
Query 17427 TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484
||||| |||||| | | || || || | |||||||||||| ||||||||
Sbjct 3318550 TAAGACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493
Score = 96.9 bits (106), Expect = 4e-15
Identities = 185/267 (69%), Gaps = 7/267 (3%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
|||||||| || ||||| || || | || ||| || ||||| || || || | ||
Sbjct 17628924 TTCATATAGCGAATCTTACCAAAGATGGCACGCTCTTTCCAACCTTGATCATGTATGCCG 17628865
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901
| | || ||| | ||| ||||| || || || ||||| ||||| | ||| |||||
Sbjct 17628864 CCGATGGACCACATGCAGCCCACATAACCATTAGGATCACGACCATCGAGACTA-TATTT 17628806
Query 119902 ATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960
||| || | | ||| || || | || || | |||||||||| |||| || || |
Sbjct 17628805 ATCATTAAGCAATATAGCATACTCCAAAGCCAGCT-CAGGAGTCTCAGTCCACTCAAGAA 17628747
Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020
|||| || ||||| ||||| ||||| | ||||||||||| || || | || | || |
Sbjct 17628746 TTTTCTTGGCCCAATACATGCGTAAAAAGCCATGCATTTTGCCCTCCTGCACAAGCTGCA 17628687
Query 120021 GTTGTGCGGCGTTCCATAAGGGATCGT 120047
| || || | |||||||| ||||||
Sbjct 17628686 GCTGCGCCGAGTTCCATA---GATCGT 17628663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545561184080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |