Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=33300182 Score = 100 bits (110), Expect = 2e-16 Identities = 276/418 (66%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 || ||| | || || ||||||||| | || ||||| ||||| ||| |||| ||| | Sbjct 20734683 GGTCCCGTGTATGGTTTCCAGTGGCGTCACTTTGGTGCGGAGTATCGCACCTGT-AATGA 20734741 Query 18858 AACTATTTACAGC----AAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913 | |||||| |||| || |||||||| || ||||| |||| | | Sbjct 20734742 ---TGAATACAGCGGCCAAGGCATTGATCAGCTCCAGGAGGTTATTAATACCTTGCGCAA 20734798 Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973 || ||| || || || || || || | |||||||| | ||||| ||| ||| Sbjct 20734799 GAATCCAACTGATCGTCGCATCATAATGTCCGCCTGGAATCCCATTGATATACCCAAAAT 20734858 Query 18974 GGTACTACCTCCATGTCACA-CGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCT 19032 || ||| || || || ||| | | || ||||| || || || || |||||| | |||| Sbjct 20734859 GGCACTGCCGCCTTGCCACTGCCTGGTG-CAGTTCTATGTGGCCAATGGTGAACTCTCCT 20734917 Query 19033 GCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGAT 19092 | || | || || | | || ||||| || || || || ||||||||||| | Sbjct 20734918 GTCAGCTTTATCAACGCAGCGCCGACATGGGACTGGGAGTTCCCTTCAACATTGCATCCT 20734977 Query 19093 ATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTC 19152 |||| |||||||||| || |||| ||||| || || | || || || || || || | Sbjct 20734978 ATGCGTTTCTTACCTATATGATAGCCCATGTAACGGGCTTGAAGACAGGCGACTTTATCC 20735037 Query 19153 ATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT 19210 |||| | || ||||| ||| | || ||||||| | || | || | || ||||| Sbjct 20735038 ATACGCTTGGCGATGCTCATGTCTATAAGAATCATGTGGAGCCATTGAGAGAACAGCT 20735095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503970786270