Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 seq1 87.8 2e-12 >seq2 Length=22510139 Score = 212 bits (234), Expect = 7e-50 Identities = 553/839 (66%), Gaps = 11/839 (1%) Strand=Plus/Minus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || ||||| ||| || || ||||| || || || || |||||||| || || || Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || |||||||||| ||||||| | |||||||||| || | || | Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 || | || | ||| || || ||||| || || | ||||| | || ||||| Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATG 3319134 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || || | |||||||| ||||| | || || || || |||||||| ||| || || Sbjct 3319133 CCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCC 3319074 Query 24075 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 24130 ||||| | | || | | |||| | || | | || ||||| ||||| Sbjct 3319073 TCAATAATTGC----AATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACAT 3319018 Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || || ||||| | ||||| || | |||| || ||||| || || Sbjct 3319017 CAACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGT 3318958 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 | || ||||| ||||||||||| || ||||| || ||||| || || || ||| Sbjct 3318957 CAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAA 3318898 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGTCA 24308 |||||| || || || || || |||||||||| | || ||| | ||| || | Sbjct 3318897 GAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGA 3318838 Query 24309 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | |||||| | ||||| || ||||| || ||| |||||||| || || || Sbjct 3318837 GGATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGC 3318778 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| || ||||||| | | ||| ||||| |||||||| | | |||||| Sbjct 3318777 ATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATA 3318718 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| ||||| || | || || || || || || ||||| || || || | ||||| || Sbjct 3318717 CATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGT 3318658 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 ||||| |||||| || ||| || || | | || ||||| || || || ||| ||| Sbjct 3318657 TATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGC 3318598 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||| ||||| ||||| |||||| ||||| | || | ||| || | ||| Sbjct 3318597 TGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCA 3318538 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 ||| | || || ||||| | ||||||||||||||| ||||||||||| || || |||| Sbjct 3318537 GTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479 >seq1 Length=33300182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 |||||||| |||||||||||||| || || |||||||| || ||||| | |||||||| Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 | ||| || || || | |||| || ||||| |||| | | ||||| ||| |||| Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 54899 GTTACTCC 54906 || || || Sbjct 15795887 GTAACACC 15795894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721555470880