Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq5 95.1 2e-14 seq1 91.5 2e-13 >seq2 Length=22510139 Score = 114 bits (126), Expect = 2e-20 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 |||||||| || || | || |||| ||| ||||||| | ||| |||||||| || | Sbjct 17628954 ACATCAAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGATGGCA 17628895 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 | |||||||| || |||||| || || | || |||||||| || || ||||| ||| Sbjct 17628894 CGCTCTTTCCAACCTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACATAACCA 17628835 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTA--AATNNNNNNNNNNNNNNAATG 202937 || |||||||| ||||| | | |||||||||||| | ||| || | Sbjct 17628834 TTAGGATCACGACCATCGAGACTATATTTATCATTAAGCAAT--ATAGCATACTCCAAAG 17628777 Query 202938 CTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATC 202997 | || || | | ||||| || | ||||| || ||||||||||| | |||| | | Sbjct 17628776 CCAGCTCAGGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAAAAGC 17628717 Query 202998 CATGCATTTTACC 203010 |||||||||| || Sbjct 17628716 CATGCATTTTGCC 17628704 >seq5 Length=23724088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 516/784 (66%), Gaps = 72/784 (9%) Strand=Plus/Plus Query 228381 TTTGAAAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATC 228440 ||| ||| ||| | ||| || || | ||||||||||||| || |||| | || Sbjct 1950994 TTTTAAAAAATAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAAT 1951053 Query 228441 ATTAATCAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTT--TATAATTAAT 228498 | |||| |||| ||||| | || | |||||| |||| ||| | |||||||||| Sbjct 1951054 A-TAATATAATT-AATAT----AAATATAATATAATTAATATAAATATAATATAATTAAT 1951107 Query 228499 TTAGATAATTTGAAAGAATTAGATATATCTAGAA-AT-TTTAATATAAATATTTCATCAT 228556 || ||| | | | ||||| ||||| || || || ||||||||||||| || || Sbjct 1951108 ATA---AATATAATATAATTA-ATATAAATATAATATAATTAATATAAATATAATATAAT 1951163 Query 228557 TACCAAAATCAT----TGATTACATTAAATAT----TAATTCATGT-TATATAAAACACA 228607 || | || || | |||| ||||||| ||||| || | |||||| | | | Sbjct 1951164 TAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAATATAATATA-A 1951222 Query 228608 CTAATTT---TATAA-ATGATTTATATAATTTGAAGGAATTGGATATATCTAGAAATTA- 228662 |||| | ||||| || ||| |||||| | || | | ||||| || || || Sbjct 1951223 TTAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAATATAATATAA 1951282 Query 228663 -TAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTAGTGATTGCG 228721 |||||||||||| || |||| | || | |||| |||| ||||| | | || Sbjct 1951283 TTAATATAAATATAATATAATTAATATAAATA-TAATATAATT-AATATAAAT-AT---A 1951336 Query 228722 ATATTAAAAATACTAATTTTATAAATGATTTAGAT-AATTTGAAAGAATT-AGATATATC 228779 |||| | |||| ||| | || | || ||| | || ||| | | | |||| | ||| || Sbjct 1951337 ATATAATTAATA-TAAATATA-ATATAATTAATATAAATATAATATAATTAATATAAATA 1951394 Query 228780 TAACAATTATAATATAAATATTTCATCATTACCAAAAACATTGACTACATTAAATATTAG 228839 ||| | |||||||||||| || |||| | ||| || | || | | ||||| | Sbjct 1951395 TAATATAATTAATATAAATATAATATAATTAATATAAATAT--AATATAATTAATATAA- 1951451 Query 228840 TTCATGTAATATAAAAAATACtaattt--tataattaatttagataatttgaaagaatt- 228896 || |||||||| |||| ||| | |||||||||| || ||| | | | |||| Sbjct 1951452 ---ATATAATATAATTAATATAAATATAATATAATTAATATA---AATATAATATAATTA 1951505 Query 228897 agatatatctaaaaattttaatataaatatttCATCATTACCAAAATCATTGATTACATT 228956 | ||| || ||| | ||||||||||||| || |||| | || || | || | | Sbjct 1951506 ATATAAATATAATATAATTAATATAAATATAATATAATTAATATAA--ATATAATATAAT 1951563 Query 228957 AAATATTAATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATAT-AATTTGA 229015 ||||| | || | |||||| ||| ||| | || | || ||| |||| ||| | | Sbjct 1951564 TAATATAA----ATATAATATAATTAATA-TAAATATA-ATATAATTAATATAAATATAA 1951617 Query 229016 AAGAATT-AGATATATCTAACAATTATAATATAAATATTTCATCATTACCAAATACAT-T 229073 | |||| | ||| || ||| | |||||||||||| || |||| | ||| || | Sbjct 1951618 TATAATTAATATAAATATAATATAATTAATATAAATATAATATAATTA--ATATAAATAT 1951675 Query 229074 AATTGAATTAAATATTAGTTCGTGTTATATAAAAAATACTAATTT--TATAATTAATTTA 229131 ||| |||| ||||| | | | |||||| |||| ||| | |||||||||| || Sbjct 1951676 AATATAATT-AATATAA----ATATAATATAATTAATATAAATATAATATAATTAATATA 1951730 Query 229132 GATA 229135 ||| Sbjct 1951731 AATA 1951734 Score = 84.2 bits (92), Expect = 3e-11 Identities = 185/277 (67%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || ||||| || || || | ||| |||| | | Sbjct 5414256 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCT 5414315 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || ||||| || || |||||||| || || ||||| Sbjct 5414316 GATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 5414375 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || || | |||||| | || || | || || ||| Sbjct 5414376 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGACTACAAT 5414435 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA-------TTAA 124771 || || || || ||||| | ||||||||||| ||| | || || || | |||| Sbjct 5414436 ATCCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGTCTTCGCGGCGGAATTTAAATTTAA 5414495 Query 124772 AAATTCATA-AAAATTGATTGTAAATAAATATCACTA 124807 | ||||| | |||| ||| |||| ||||||| || Sbjct 5414496 ATATTCAAACAAAAACTATTAAAAATTAATATCAATA 5414532 >seq1 Length=33300182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || || || || ||| | ||| | ||| || Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || ||||| || |||||||| || || || |||||| Sbjct 5269302 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 5269361 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || ||||| || ||| |||| || | || |||||| Sbjct 5269362 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAAT 5269421 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || |||| ||||| | || | || |||||| Sbjct 5269422 ATTCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTCCGTGGTGGT 5269469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455943340800