Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 2e-20
seq5 95.1 2e-14
seq1 91.5 2e-13
>seq2
Length=22510139
Score = 114 bits (126), Expect = 2e-20
Identities = 176/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819
|||||||| || || | || |||| ||| ||||||| | ||| |||||||| || |
Sbjct 17628954 ACATCAAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGATGGCA 17628895
Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879
| |||||||| || |||||| || || | || |||||||| || || ||||| |||
Sbjct 17628894 CGCTCTTTCCAACCTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACATAACCA 17628835
Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTA--AATNNNNNNNNNNNNNNAATG 202937
|| |||||||| ||||| | | |||||||||||| | ||| || |
Sbjct 17628834 TTAGGATCACGACCATCGAGACTATATTTATCATTAAGCAAT--ATAGCATACTCCAAAG 17628777
Query 202938 CTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATC 202997
| || || | | ||||| || | ||||| || ||||||||||| | |||| | |
Sbjct 17628776 CCAGCTCAGGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAAAAGC 17628717
Query 202998 CATGCATTTTACC 203010
|||||||||| ||
Sbjct 17628716 CATGCATTTTGCC 17628704
>seq5
Length=23724088
Score = 95.1 bits (104), Expect = 2e-14
Identities = 516/784 (66%), Gaps = 72/784 (9%)
Strand=Plus/Plus
Query 228381 TTTGAAAGAATTAGATATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATC 228440
||| ||| ||| | ||| || || | ||||||||||||| || |||| | ||
Sbjct 1950994 TTTTAAAAAATAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAAT 1951053
Query 228441 ATTAATCAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTT--TATAATTAAT 228498
| |||| |||| ||||| | || | |||||| |||| ||| | ||||||||||
Sbjct 1951054 A-TAATATAATT-AATAT----AAATATAATATAATTAATATAAATATAATATAATTAAT 1951107
Query 228499 TTAGATAATTTGAAAGAATTAGATATATCTAGAA-AT-TTTAATATAAATATTTCATCAT 228556
|| ||| | | | ||||| ||||| || || || ||||||||||||| || ||
Sbjct 1951108 ATA---AATATAATATAATTA-ATATAAATATAATATAATTAATATAAATATAATATAAT 1951163
Query 228557 TACCAAAATCAT----TGATTACATTAAATAT----TAATTCATGT-TATATAAAACACA 228607
|| | || || | |||| ||||||| ||||| || | |||||| | | |
Sbjct 1951164 TAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAATATAATATA-A 1951222
Query 228608 CTAATTT---TATAA-ATGATTTATATAATTTGAAGGAATTGGATATATCTAGAAATTA- 228662
|||| | ||||| || ||| |||||| | || | | ||||| || || ||
Sbjct 1951223 TTAATATAAATATAATATAATTAATATAAATATAATATAATTAATATAAATATAATATAA 1951282
Query 228663 -TAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAATATTAGTGATTGCG 228721
|||||||||||| || |||| | || | |||| |||| ||||| | | ||
Sbjct 1951283 TTAATATAAATATAATATAATTAATATAAATA-TAATATAATT-AATATAAAT-AT---A 1951336
Query 228722 ATATTAAAAATACTAATTTTATAAATGATTTAGAT-AATTTGAAAGAATT-AGATATATC 228779
|||| | |||| ||| | || | || ||| | || ||| | | | |||| | ||| ||
Sbjct 1951337 ATATAATTAATA-TAAATATA-ATATAATTAATATAAATATAATATAATTAATATAAATA 1951394
Query 228780 TAACAATTATAATATAAATATTTCATCATTACCAAAAACATTGACTACATTAAATATTAG 228839
||| | |||||||||||| || |||| | ||| || | || | | ||||| |
Sbjct 1951395 TAATATAATTAATATAAATATAATATAATTAATATAAATAT--AATATAATTAATATAA- 1951451
Query 228840 TTCATGTAATATAAAAAATACtaattt--tataattaatttagataatttgaaagaatt- 228896
|| |||||||| |||| ||| | |||||||||| || ||| | | | ||||
Sbjct 1951452 ---ATATAATATAATTAATATAAATATAATATAATTAATATA---AATATAATATAATTA 1951505
Query 228897 agatatatctaaaaattttaatataaatatttCATCATTACCAAAATCATTGATTACATT 228956
| ||| || ||| | ||||||||||||| || |||| | || || | || | |
Sbjct 1951506 ATATAAATATAATATAATTAATATAAATATAATATAATTAATATAA--ATATAATATAAT 1951563
Query 228957 AAATATTAATTCATGTTATATAAACCATACTAATTTTATAAATGATTTATAT-AATTTGA 229015
||||| | || | |||||| ||| ||| | || | || ||| |||| ||| | |
Sbjct 1951564 TAATATAA----ATATAATATAATTAATA-TAAATATA-ATATAATTAATATAAATATAA 1951617
Query 229016 AAGAATT-AGATATATCTAACAATTATAATATAAATATTTCATCATTACCAAATACAT-T 229073
| |||| | ||| || ||| | |||||||||||| || |||| | ||| || |
Sbjct 1951618 TATAATTAATATAAATATAATATAATTAATATAAATATAATATAATTA--ATATAAATAT 1951675
Query 229074 AATTGAATTAAATATTAGTTCGTGTTATATAAAAAATACTAATTT--TATAATTAATTTA 229131
||| |||| ||||| | | | |||||| |||| ||| | |||||||||| ||
Sbjct 1951676 AATATAATT-AATATAA----ATATAATATAATTAATATAAATATAATATAATTAATATA 1951730
Query 229132 GATA 229135
|||
Sbjct 1951731 AATA 1951734
Score = 84.2 bits (92), Expect = 3e-11
Identities = 185/277 (67%), Gaps = 8/277 (3%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || ||||| || || || | ||| |||| | |
Sbjct 5414256 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTCT 5414315
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| || | || || ||||| || || |||||||| || || |||||
Sbjct 5414316 GATACCATTGAGAACGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 5414375
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | ||||| || || || || | |||||| | || || | || || |||
Sbjct 5414376 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTCTTTCTGACTACAAT 5414435
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA-------TTAA 124771
|| || || || ||||| | ||||||||||| ||| | || || || | ||||
Sbjct 5414436 ATCCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGTCTTCGCGGCGGAATTTAAATTTAA 5414495
Query 124772 AAATTCATA-AAAATTGATTGTAAATAAATATCACTA 124807
| ||||| | |||| ||| |||| ||||||| ||
Sbjct 5414496 ATATTCAAACAAAAACTATTAAAAATTAATATCAATA 5414532
>seq1
Length=33300182
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || || || || || || || ||| | ||| | ||| ||
Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| | ||| || ||||| || |||||||| || || || ||||||
Sbjct 5269302 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 5269361
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | || || || || || ||||| || ||| |||| || | || ||||||
Sbjct 5269362 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTATAAT 5269421
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|||||||| || || || |||| ||||| | || | || ||||||
Sbjct 5269422 ATTCAAAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTCCGTGGTGGT 5269469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455943340800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |