Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 141 8e-29 seq1 127 2e-24 seq5 116 3e-21 >seq3 Length=28180402 Score = 141 bits (156), Expect = 8e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22369950 CACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22370009 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22370010 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22370069 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22370070 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22370129 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTA 118749 ||| |||| || || ||||| |||||||||| || || || Sbjct 22370130 GCCAGTCAATGTCTTCACAAAGATCTGCATGGTTTTTTATA 22370170 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22368810 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22368869 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22368870 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22368929 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22368930 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22368989 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 22368990 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22369038 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369097 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22369098 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369157 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22369158 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369217 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 22369218 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22369266 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369325 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22369326 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369385 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22369386 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369445 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 22369446 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22369494 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369553 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22369554 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369613 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22369614 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369673 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 22369674 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22369722 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369781 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22369782 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369841 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 22369842 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369901 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 22369902 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 >seq1 Length=33300182 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || ||| || ||| || Sbjct 90675 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 90734 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| | |||||||||||| || || || ||||| |||||| Sbjct 90735 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 90794 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | | ||||||||| | ||| | || || Sbjct 90795 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 90854 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||| ||||| || ||||| Sbjct 90855 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 90884 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || ||| || ||| || Sbjct 2542937 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 2542878 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| | |||||||||||| || || || ||||| |||||| Sbjct 2542877 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 2542818 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | | ||||||||| | ||| | || || Sbjct 2542817 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2542758 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||| ||||| || ||||| Sbjct 2542757 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728 >seq5 Length=23724088 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || ||||| || || ||||| ||||| | ||| || ||| Sbjct 5414012 CAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATC 5413953 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| | || | |||||||||||| || || || || |||||||| Sbjct 5413952 CTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 5413893 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||||| | || | ||| || | | ||| ||||||| ||| | || Sbjct 5413892 CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGT 5413833 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || || |||||| Sbjct 5413832 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || ||||| || || ||||| ||||| | ||| || ||| Sbjct 5414240 CAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATC 5414181 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| | || | |||||||||||| || || || || |||||||| Sbjct 5414180 CTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 5414121 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||||| | || | ||| || | | ||| ||||||| ||| | || Sbjct 5414120 CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGT 5414061 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || || |||||| Sbjct 5414060 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || ||||| || || ||||| ||||| | ||| || ||| Sbjct 5413784 CAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATC 5413725 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| | || | ||||||||| || || || || ||||||||||| Sbjct 5413724 CTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 5413665 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | || | ||| || | ||| || || | ||| | || Sbjct 5413664 CTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGT 5413605 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | |||||| || ||||||||||| Sbjct 5413604 CTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||| ||||| |||| || ||||| || || || ||||| || Sbjct 5414482 CCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAA 5414423 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| ||||| || |||||| | || | |||||||||||| || || Sbjct 5414422 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414363 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| ||| || ||||| | || | ||| || | | ||| ||| Sbjct 5414362 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACC 5414303 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| ||| | || ||||| |||| || || || || || |||||| Sbjct 5414302 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830368276152