Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 132 3e-26 seq3 131 1e-25 seq5 87.8 1e-12 >seq1 Length=33300182 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 90658 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 90717 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| ||||||||| ||||| || | |||||||| || ||| Sbjct 90718 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 90777 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| ||||| ||| | || | || | || | | ||||| Sbjct 90778 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 90837 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| ||||||||||| |||||||||||||| |||||| Sbjct 90838 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATC 90885 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 2542954 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2542895 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| ||||||||| ||||| || | |||||||| || ||| Sbjct 2542894 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 2542835 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| ||||| ||| | || | || | || | | ||||| Sbjct 2542834 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2542775 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| ||||||||||| |||||||||||||| |||||| Sbjct 2542774 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATC 2542727 >seq3 Length=28180402 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 22368793 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368852 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22368853 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368912 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22368913 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368972 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22368973 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 22369021 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369080 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22369081 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369140 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22369141 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369200 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22369201 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 22369249 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369308 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22369309 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369368 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22369369 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369428 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22369429 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 22369477 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369536 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22369537 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369596 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22369597 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369656 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22369657 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||||||| Sbjct 22369705 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369764 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22369765 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369824 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22369825 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369884 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22369885 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 22368564 TCCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 22368623 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22368624 CAGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 22368683 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22368684 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAAC 22368743 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22368744 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || ||||| ||||||||||||||| Sbjct 22369933 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 22369992 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 22369993 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22370052 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 22370053 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22370112 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||||||||||||||| Sbjct 22370113 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 22370159 >seq5 Length=23724088 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | || || ||||| ||||| || || || Sbjct 5413798 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAA 5413739 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || ||||| | ||||||||||| ||| Sbjct 5413738 AGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGA 5413679 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | ||| | | || || Sbjct 5413678 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACT 5413619 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || ||||| || | |||||| || || ||||||||| Sbjct 5413618 TCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATC 5413571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071976375360