Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 161 9e-35 >seq2 Length=22510139 Score = 161 bits (178), Expect = 9e-35 Identities = 575/888 (65%), Gaps = 8/888 (1%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||||| | |||||||||||| ||| || | || ||| Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCG 3319303 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||| || | ||| |||| |||||||| || |||||||| || || ||||| |||| Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAAT-TCCAACAATA 16064 ||| || || ||||| |||| | |||| |||| || || |||| |||| || | Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAG-ATTTTTCCCACACCAAGCTCCACCAGCA 3319184 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 | ||| ||||| || || || |||| | ||| | | | |||||||| || || || | Sbjct 3319183 GGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGT 3319124 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 |||| || | || ||||| | || | | ||| || || || || || || || Sbjct 3319123 TAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTG 3319064 Query 16185 CTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAG-CAAA 16242 | | | | | || | ||| | | | || || ||||| | ||| | |||| Sbjct 3319063 CAATGA-TGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCA-ACACGGCAAA 3319006 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||||| ||||| || || || | |||| ||| || || || || | || ||||| Sbjct 3319005 GTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCAT 3318946 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 || || || || || | ||| || || | ||| || || |||||| || || || Sbjct 3318945 GAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTC 3318886 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 ||| ||||| || |||| | ||||| || | | | || ||||||| Sbjct 3318885 AACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGA 3318826 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 | ||||| | || || | || ||| ||| | || |||||||| || | ||| Sbjct 3318825 TAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATA 3318766 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 | | || | ||| | ||| ||||| || || | ||||||||| || || || Sbjct 3318765 GTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGTG 3318706 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||||||| || ||||| || ||||||||||| | || || | ||| || ||||| Sbjct 3318705 GACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTC 3318646 Query 16603 -AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661 || | ||| | || | | ||| || || || || ||||| ||||| ||||| | Sbjct 3318645 TTGACT-AAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATG 3318587 Query 16662 CAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAAT 16721 | | | ||| |||||| | || || |||| ||| | |||||||| | | Sbjct 3318586 CCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGT 3318527 Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || || | ||| || ||||| ||||||||||| || || | |||| Sbjct 3318526 CCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511965311600