Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 9e-35
>seq2
Length=22510139
Score = 161 bits (178), Expect = 9e-35
Identities = 575/888 (65%), Gaps = 8/888 (1%)
Strand=Plus/Minus
Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945
||||||||| ||||| | |||||||||||| ||| || | || |||
Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCG 3319303
Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005
|||||| || | ||| |||| |||||||| || |||||||| || || ||||| ||||
Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243
Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAAT-TCCAACAATA 16064
||| || || ||||| |||| | |||| |||| || || |||| |||| || |
Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAG-ATTTTTCCCACACCAAGCTCCACCAGCA 3319184
Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124
| ||| ||||| || || || |||| | ||| | | | |||||||| || || || |
Sbjct 3319183 GGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGT 3319124
Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184
|||| || | || ||||| | || | | ||| || || || || || || ||
Sbjct 3319123 TAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTG 3319064
Query 16185 CTCTTACTACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAG-CAAA 16242
| | | | | || | ||| | | | || || ||||| | ||| | ||||
Sbjct 3319063 CAATGA-TGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCA-ACACGGCAAA 3319006
Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302
||||| ||||| || || || | |||| ||| || || || || | || |||||
Sbjct 3319005 GTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCAT 3318946
Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362
|| || || || || | ||| || || | ||| || || |||||| || || ||
Sbjct 3318945 GAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTC 3318886
Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422
||| ||||| || |||| | ||||| || | | | || |||||||
Sbjct 3318885 AACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGA 3318826
Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482
| ||||| | || || | || ||| ||| | || |||||||| || | |||
Sbjct 3318825 TAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATA 3318766
Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542
| | || | ||| | ||| ||||| || || | ||||||||| || || ||
Sbjct 3318765 GTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGTG 3318706
Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
| ||||||||| || ||||| || ||||||||||| | || || | ||| || |||||
Sbjct 3318705 GACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTC 3318646
Query 16603 -AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661
|| | ||| | || | | ||| || || || || ||||| ||||| ||||| |
Sbjct 3318645 TTGACT-AAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATG 3318587
Query 16662 CAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAAT 16721
| | | ||| |||||| | || || |||| ||| | |||||||| | |
Sbjct 3318586 CCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGT 3318527
Query 16722 CTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
| || || | ||| || ||||| ||||||||||| || || | ||||
Sbjct 3318526 CCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511965311600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |