Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 2e-24
seq1 118 8e-22
seq5 98.7 8e-16
>seq3
Length=28180402
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22369951 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22370010
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22370011 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22370070
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22370071 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22370130
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||||||||||| ||||||
Sbjct 22370131 CCAGTCAATGTCTTCACAAAGATCTGCATG 22370160
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22368811 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368870
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22368871 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368930
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22368931 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368990
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22368991 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22369039 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369098
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22369099 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369158
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22369159 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369218
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22369219 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22369267 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369326
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22369327 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369386
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22369387 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369446
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22369447 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22369495 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369554
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22369555 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369614
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22369615 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369674
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22369675 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| ||| ||| | || |||
Sbjct 22369723 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369782
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || || |||||||| |||| ||||| ||||| || || | |||||||||||
Sbjct 22369783 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369842
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 22369843 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369902
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| ||||| |||||
Sbjct 22369903 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
>seq1
Length=33300182
Score = 118 bits (130), Expect = 8e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| ||| || | || |||
Sbjct 90676 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 90735
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| || || || || | ||||| |||||
Sbjct 90736 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 90795
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || ||||||
Sbjct 90796 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 90855
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| || || || ||||||||||||||||| |||
Sbjct 90856 CCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888
Score = 118 bits (130), Expect = 8e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| ||| || | || |||
Sbjct 2542936 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 2542877
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| ||||| ||||| || || || || | ||||| |||||
Sbjct 2542876 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 2542817
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| ||| ||||||| ||| || ||||||
Sbjct 2542816 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 2542757
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| || || || ||||||||||||||||| |||
Sbjct 2542756 CCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724
>seq5
Length=23724088
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | || | || |||||||| || || ||||||||| ||||| || ||
Sbjct 5414027 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413968
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || ||||| || || || ||||| ||||| ||||| || || || ||
Sbjct 5413967 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5413908
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||| ||||||||| ||| || |||||| | | | | | || ||| ||
Sbjct 5413907 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5413848
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||| | ||| || |||||||| |||| ||||| || ||||||||||||
Sbjct 5413847 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | || | || |||||||| || || ||||||||| ||||| || ||
Sbjct 5414255 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5414196
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || ||||| || || || ||||| ||||| ||||| || || || ||
Sbjct 5414195 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5414136
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||| ||||||||| ||| || |||||| | | | | | || ||| ||
Sbjct 5414135 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414076
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||| | ||| || |||||||| |||| ||||| || ||||||||||||
Sbjct 5414075 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| ||||| || || || ||||||||| || |||||||| || || | ||
Sbjct 5414467 AAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCC 5414408
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
||||| || || || ||||| ||||| ||||| || || || || | ||| |||||||||
Sbjct 5414407 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 5414348
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
||| || |||||| | | | | | || ||| ||||| | ||| || |||
Sbjct 5414347 TGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTC 5414288
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| |||| ||||| || ||||||||||||
Sbjct 5414287 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | || | || |||||||| || || ||||||||| ||||| || ||
Sbjct 5413799 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413740
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || || || || || || || || ||||| ||||| ||||| || ||
Sbjct 5413739 AAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGG 5413680
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||||| ||| || ||| || | | | | | || | ||| ||
Sbjct 5413679 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 5413620
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|||| ||| || |||||||| || | ||| || || || || ||||| ||
Sbjct 5413619 TTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075171110126
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