Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq1 118 8e-22 seq5 98.7 8e-16 >seq3 Length=28180402 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22369951 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22370010 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22370011 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22370070 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22370071 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22370130 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||||||||| |||||| Sbjct 22370131 CCAGTCAATGTCTTCACAAAGATCTGCATG 22370160 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22368811 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368870 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22368871 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368930 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22368931 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368990 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22368991 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22369039 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369098 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22369099 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369158 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22369159 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369218 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22369219 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22369267 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369326 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22369327 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369386 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22369387 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369446 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22369447 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22369495 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369554 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22369555 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369614 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22369615 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369674 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22369675 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| ||| ||| | || ||| Sbjct 22369723 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22369782 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 22369783 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22369842 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 22369843 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22369902 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 22369903 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 >seq1 Length=33300182 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| || | || ||| Sbjct 90676 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 90735 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || || || | ||||| ||||| Sbjct 90736 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 90795 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||||| ||| || |||||| Sbjct 90796 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 90855 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || ||||||||||||||||| ||| Sbjct 90856 CCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| |||||||||||| ||| || | || ||| Sbjct 2542936 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCC 2542877 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| || || || || | ||||| ||||| Sbjct 2542876 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTGG 2542817 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||| ||||||| ||| || |||||| Sbjct 2542816 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTG 2542757 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || || ||||||||||||||||| ||| Sbjct 2542756 CCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724 >seq5 Length=23724088 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || |||||||| || || ||||||||| ||||| || || Sbjct 5414027 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413968 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| || || || ||||| ||||| ||||| || || || || Sbjct 5413967 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5413908 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| ||||||||| ||| || |||||| | | | | | || ||| || Sbjct 5413907 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5413848 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| ||||| || |||||||||||| Sbjct 5413847 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || |||||||| || || ||||||||| ||||| || || Sbjct 5414255 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5414196 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| || || || ||||| ||||| ||||| || || || || Sbjct 5414195 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5414136 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| ||||||||| ||| || |||||| | | | | | || ||| || Sbjct 5414135 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414076 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| ||||| || |||||||||||| Sbjct 5414075 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||||||||| || |||||||| || || | || Sbjct 5414467 AAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCC 5414408 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || || ||||| ||||| ||||| || || || || | ||| ||||||||| Sbjct 5414407 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 5414348 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || |||||| | | | | | || ||| ||||| | ||| || ||| Sbjct 5414347 TGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTC 5414288 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| |||| ||||| || |||||||||||| Sbjct 5414287 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || |||||||| || || ||||||||| ||||| || || Sbjct 5413799 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413740 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || || || || || || || || ||||| ||||| ||||| || || Sbjct 5413739 AAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGG 5413680 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| ||| || ||| || | | | | | || | ||| || Sbjct 5413679 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 5413620 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| ||| || |||||||| || | ||| || || || || ||||| || Sbjct 5413619 TTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCATCTT 5413569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075171110126