Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 143 5e-29 >seq2 Length=22510139 Score = 143 bits (158), Expect = 5e-29 Identities = 309/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||||| | | ||| ||||||| || || ||||| || || |||||||| || || Sbjct 3318853 TTTGGCG-AGCGGATTATTGCCTTCGCCGCCGTTGAGGGCATTTTCTTTAGCGGCAGCTT 3318911 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||| |||||||||||| | ||||| | || | ||||||| | |||| ||||||||| Sbjct 3318912 CGCCTCCATTTTCTGGCTAAAGAAGCGTGGCCTCATGCCTGGCTTGACCTTCTCCAATGA 3318971 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | | || || | || || || | || | |||||||| || |||| | Sbjct 3318972 GCTAATCTCGCGCGATGAGGGCTTGCACTGTGACTTTGCCGTGTTGATGTTCCGCCA--- 3319028 Query 102082 TTTTGTTGATAC--CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGA 102139 |||| || || |||| | | || | || ||| |||| | || || ||| Sbjct 3319029 -TTTGGTGCAACGTCCCAGCC-GTGAGCGCATCATTGCAATTATTGAGGATGCTGTCAAG 3319086 Query 102140 ATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG 102199 |||||||| || || ||||||| | | ||||| ||||| || | || ||||||||| Sbjct 3319087 ATTGAACAGGAGTTCCTCACAGATGCTCTGCCAGTTAACTTGATTGGCATGAACTGCGCT 3319146 Query 102200 TTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA 102259 ||||| |||||||||| || ||||| ||| || |||| || | || | | | Sbjct 3319147 CTGATGTCAGAGTACATTGAGTTCGTGGCTGATCGCCTGCTGGTGGAGCTTGGTGTGGGA 3319206 Query 102260 AAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAG 102319 || ||||||| | || || || |||||||||| | ||||| | || || Sbjct 3319207 AAAATCTATAATACAAAGAATCCATTGACATTCATGGAAATGATTTCGTTGGACGGAAAA 3319266 Query 102320 ACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACG 102357 || ||||| ||||| |||| ||| | |||||||||||| Sbjct 3319267 ACTAACTTCTTTGAGAAGAAAGTGGGCGAGTATCAACG 3319304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583923925730