Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 228 1e-54 seq1 87.8 2e-12 >seq2 Length=22510139 Score = 228 bits (252), Expect = 1e-54 Identities = 553/835 (66%), Gaps = 3/835 (0%) Strand=Plus/Minus Query 35858 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 35917 || ||||| ||| || || ||||| || || || || |||||||| || || || Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254 Query 35918 GATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT 35977 || || |||||||||| |||||||| | |||||| |||||| | || | Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194 Query 35978 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 36037 || | || | ||| || || || || || || | ||||| | || ||||| Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATG 3319134 Query 36038 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 36097 || || | |||||||| ||||| | || || || || |||||||| ||| || || Sbjct 3319133 CCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCC 3319074 Query 36098 GTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 36157 ||||| | || | || || || | | || ||||| |||||||| Sbjct 3319073 TCAATAATTGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAAC 3319014 Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||||| | ||||| || | |||| || ||||| || || | Sbjct 3319013 ACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAG 3318954 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| ||||||||||| || ||||| || ||||| || || || ||||||| Sbjct 3318953 CCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAA 3318894 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG-T 36334 || || || || || || |||||||||| | ||| ||| | |||| || | | | Sbjct 3318893 ATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGAT 3318834 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| | ||||| || ||||| || ||| |||||||| || || ||||| Sbjct 3318833 ATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTG 3318774 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || ||||||| | | ||| ||||| |||||||| | | ||||||||| Sbjct 3318773 AACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATC 3318714 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 ||||| || | || || || || || || ||||| || || || | ||||| || ||| Sbjct 3318713 TCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATC 3318654 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || |||||| || ||| || || | | || ||||| || || || ||| |||||| Sbjct 3318653 TGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCG 3318594 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCA 36634 ||||| ||||| |||||| ||||| | || || ||| || | ||| ||| Sbjct 3318593 AAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCA 3318534 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | || || ||||| | ||||||||||||||| ||||||||||| || || |||| Sbjct 3318533 GTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479 >seq1 Length=33300182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 |||||||| |||||||||||||| || || |||||||| || |||| | |||||||| Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 | ||| || || || | |||| || ||||| ||||| | | ||||| ||| |||| Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 66930 GTTACTCC 66937 || || || Sbjct 15795887 GTAACACC 15795894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172750637040