Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=33300182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987 || || || || || || || || || || || || | || || | |||||| || | Sbjct 20735080 GGCTCCACATGATTCTTATAGACATGAGCATCGCCAAGCGTATGGATAAAGTCGCCTGTC 20735021 Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 ||| |||||| || || || |||| ||| || || | || ||| || ||||| || Sbjct 20735020 TTCAAGCCCGTTACATGGGCTATCATATAGGTAAGAAACGCATAGGATGCAATGTTGAAG 20734961 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107 || || || || |||||||||||| | || || ||||| ||||| || || || Sbjct 20734960 GGAACTCCCAGTCCCATGTCGGCGCTGCGTTGATAAAGCTGACAGGAGAGTTCACCATTG 20734901 Query 21108 GCCACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 ||||| || ||||| ||| | | ||| ||||| || || ||||| | | || Sbjct 20734900 GCCACATAGAACTG-CACCAGGCAGTGGCAAGGCGGCAGTGCCATTTTGGGTATATCAAT 20734842 Query 21167 GGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 ||| ||||| ||| |||| | |||||| ||||| Sbjct 20734841 GGGATTCCAGGCGGACATTATGATGCGACGATC 20734809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775968718880