Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2 185 8e-42
>seq2
Length=22510139
Score = 185 bits (204), Expect = 8e-42
Identities = 574/878 (65%), Gaps = 18/878 (2%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|||||||| ||||||||| ||| |||||||| || || | || ||||| |
Sbjct 3319361 TAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCGT 3319302
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
||||| || | ||| | || ||||||||||||||||| || |||| || || |||||
Sbjct 3319301 TGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCC 3319242
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACA-ACCTAGTTCTAATAGTAA 13702
|| || |||||||| ||| || | | ||| || || ||| || || | || |
Sbjct 3319241 ATGAATGTCAATGGATTCTTTGTATTATAGATTTT-TCCCACACCAAGCTCCACCAGCAG 3319183
Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762
| |||||| | |||||||| || | ||||| | | | || ||||| || || | ||
Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123
Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822
|| || | || || | || || | ||| || ||||| || | ||||||
Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTC---AATAAT 3319066
Query 13823 TGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG-CAA 13878
|| ||| || |||| ||| | | | ||| || || || |||| |||
Sbjct 3319065 TGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAA-CACGGCAA 3319007
Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938
| ||||| || | ||||||||| | || || || || || || || || || ||||
Sbjct 3319006 AGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCA 3318947
Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998
| | || || || |||| ||| || || | || || ||| |||||| || ||||
Sbjct 3318946 TGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCT 3318887
Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058
|||| || || || || || | || || ||||| || ||| |||||||||
Sbjct 3318886 CAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATG 3318827
Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118
| ||||| |||| || || | | |||||||||||| ||||| || | ||
Sbjct 3318826 ATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGAT 3318767
Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178
| || || || | | | || |||||||| || | |||||||| || ||||
Sbjct 3318766 AGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGT 3318707
Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238
| | || ||||| || ||||| || ||||||||||| | || || | || ||||
Sbjct 3318706 GGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTT 3318647
Query 14239 C-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297
| || | ||| | || ||| || ||||| || || |||||| ||||| ||||||
Sbjct 3318646 CTTGACT-AAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAAT 3318588
Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGAT 14354
||||| | | | |||||||| || ||||||| | || || ||| || |
Sbjct 3318587 GCCAACACATGTGAAATAAAGTGACGC---TCATTGTCTGTAAGACGTTCCCAGTCAGTC 3318531
Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| |||||||| ||||| ||||| || || ||||||||
Sbjct 3318530 ATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727964020400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |