Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 185 8e-42 >seq2 Length=22510139 Score = 185 bits (204), Expect = 8e-42 Identities = 574/878 (65%), Gaps = 18/878 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| ||||||||| ||| |||||||| || || | || ||||| | Sbjct 3319361 TAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCGT 3319302 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||| | || ||||||||||||||||| || |||| || || ||||| Sbjct 3319301 TGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCC 3319242 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACA-ACCTAGTTCTAATAGTAA 13702 || || |||||||| ||| || | | ||| || || ||| || || | || | Sbjct 3319241 ATGAATGTCAATGGATTCTTTGTATTATAGATTTT-TCCCACACCAAGCTCCACCAGCAG 3319183 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||| | |||||||| || | ||||| | | | || ||||| || || | || Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | || || | || || | ||| || ||||| || | |||||| Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTC---AATAAT 3319066 Query 13823 TGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG-CAA 13878 || ||| || |||| ||| | | | ||| || || || |||| ||| Sbjct 3319065 TGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAA-CACGGCAA 3319007 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | ||||| || | ||||||||| | || || || || || || || || || |||| Sbjct 3319006 AGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCA 3318947 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | | || || || |||| ||| || || | || || ||| |||||| || |||| Sbjct 3318946 TGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCT 3318887 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||| || || || || || | || || ||||| || ||| ||||||||| Sbjct 3318886 CAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATG 3318827 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 | ||||| |||| || || | | |||||||||||| ||||| || | || Sbjct 3318826 ATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGAT 3318767 Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 | || || || | | | || |||||||| || | |||||||| || |||| Sbjct 3318766 AGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGT 3318707 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238 | | || ||||| || ||||| || ||||||||||| | || || | || |||| Sbjct 3318706 GGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTT 3318647 Query 14239 C-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 | || | ||| | || ||| || ||||| || || |||||| ||||| |||||| Sbjct 3318646 CTTGACT-AAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAAT 3318588 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGAT 14354 ||||| | | | |||||||| || ||||||| | || || ||| || | Sbjct 3318587 GCCAACACATGTGAAATAAAGTGACGC---TCATTGTCTGTAAGACGTTCCCAGTCAGTC 3318531 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | |||||||| ||||| ||||| || || |||||||| Sbjct 3318530 ATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727964020400