Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 >seq2 Length=22510139 Score = 170 bits (188), Expect = 2e-37 Identities = 571/878 (65%), Gaps = 18/878 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| ||||||||| ||| |||||||| || || | || ||||| | Sbjct 3319361 TAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCGT 3319302 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | ||| | || ||||| ||||||||||| || |||| || || ||||| Sbjct 3319301 TGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTCC 3319242 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACA-ACCTAGTTCTAATAATAA 13490 || || |||||||| ||| || | | ||| || || ||| || || | | | Sbjct 3319241 ATGAATGTCAATGGATTCTTTGTATTATAGATTTT-TCCCACACCAAGCTCCACCAGCAG 3319183 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||| | |||||||| || | ||||| | | | || ||||| || || | || Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || || | || || | || || | ||| || ||||| || | |||||| Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTC---AATAAT 3319066 Query 13611 CTTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG-CAA 13666 ||| ||| ||| ||| | | | ||| || || || |||| ||| Sbjct 3319065 TGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAA-CACGGCAA 3319007 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 | ||||| || | ||||||||| | || || || || || || || || || |||| Sbjct 3319006 AGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCA 3318947 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | | || || || |||| ||| || || | ||||| ||| |||||| || |||| Sbjct 3318946 TGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCT 3318887 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 |||| || || || || || | || || ||||| || ||| ||||||||| Sbjct 3318886 CAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATG 3318827 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | ||||| |||| || || | | ||||||||| ||||||||||| | || Sbjct 3318826 ATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGAT 3318767 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 || || || | | | || |||||||| || | |||||||| || |||| Sbjct 3318766 AGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGT 3318707 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 | | || || || || ||||| || |||||||| || | || |||| || || | Sbjct 3318706 GGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTT 3318647 Query 14027 CC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 | || |||| | || ||| ||| ||||| ||||| |||||| ||||| |||||| Sbjct 3318646 CTTGACTAAAG-CGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAAT 3318588 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCT 14142 ||||| | | | |||||||| || ||||||| | || || ||| || | Sbjct 3318587 GCCAACACATGTGAAATAAAGTGACGC---TCATTGTCTGTAAGACGTTCCCAGTCAGTC 3318531 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | |||||||| ||||| ||||| || || |||||||| Sbjct 3318530 ATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588764105840