Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 203 4e-47
seq1 91.5 2e-13
>seq2
Length=22510139
Score = 203 bits (224), Expect = 4e-47
Identities = 551/839 (66%), Gaps = 11/839 (1%)
Strand=Plus/Minus
Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824
|| ||||| ||| || || ||||| || || || || ||||| ||||| |||||
Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254
Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884
|| || |||||||||| || ||||| | |||||| |||||| | || |
Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194
Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944
|| | || | ||| || | ||| || || || | ||||| | || |||||
Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATG 3319134
Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004
|| || | |||||||| ||||| | || || || || |||||||| ||| || ||
Sbjct 3319133 CCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCC 3319074
Query 42005 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 42060
||||| | | || | | |||| | || | | || ||||| |||||
Sbjct 3319073 TCAATAATTGC----AATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACAT 3319018
Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120
||| || || || ||||||| |||||||| | |||| || ||||| || ||
Sbjct 3319017 CAACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGT 3318958
Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180
| || ||||| ||||||||||| || ||||| || || || || || || |||
Sbjct 3318957 CAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAA 3318898
Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCA 42238
||| || || || || || || |||||||||| | ||| ||| | |||| || |
Sbjct 3318897 GAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGA 3318838
Query 42239 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297
| |||||| | ||||| || ||||| || ||| ||||| ||||| || ||
Sbjct 3318837 GGATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGC 3318778
Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357
||| || ||||||| | | ||| ||||| ||||| || | | ||||||
Sbjct 3318777 ATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATA 3318718
Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417
||| || || || | || || || || ||||| ||||| || || || | ||||| ||
Sbjct 3318717 CATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGT 3318658
Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477
| ||| |||||| || ||| || ||| | | || || || || || || ||| |||
Sbjct 3318657 TATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGC 3318598
Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537
||| ||||| ||||| |||||| ||||| | || | ||| | | |||
Sbjct 3318597 TGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCA 3318538
Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
||| | || || ||||| | ||| |||||||| || ||||||||||| ||||| ||||
Sbjct 3318537 GTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479
>seq1
Length=33300182
Score = 91.5 bits (100), Expect = 2e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831
|||||||| || ||||||||||| || || |||||||| || ||||| | |||||||||
Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826
Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891
| ||| || || || | |||| || ||||| ||||| | | ||||| ||| ||||
Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886
Query 72892 GTTACTCC 72899
|| || ||
Sbjct 15795887 GTAACACC 15795894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671139149664560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |