Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 251 1e-61
seq5 150 3e-31
seq1 145 1e-29
>seq2
Length=22510139
Score = 251 bits (278), Expect = 1e-61
Identities = 609/908 (67%), Gaps = 38/908 (4%)
Strand=Plus/Plus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | ||||| |||||||| || ||||| || |||||||| |||||| || || |
Sbjct 3318479 AGGCCGAAGCCTCATTTTGGACTGTGGAAGAAGTGGATCTGTCTAAGGACATGACTGACT 3318538
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|||| ||| | || || | |||||| | ||||| || || | ||||| || || |
Sbjct 3318539 GGGAA---CGTCTTACAGACAATGAGCGTCACTTTATTTCACATGTGTTGGCATTTTTCG 3318595
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACC 125216
| | ||| ||||| || ||||| || || ||| |||| || || |||||| ||
Sbjct 3318596 CAGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAG-CGCTTTAGTCAAGAAGTGCAG 3318654
Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276
|| |||||| |||||||| |||||||| || ||| ||||| || ||||||||
Sbjct 3318655 ATAACAGAGGCACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATGTCCACTCGGAG 3318714
Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336
||||| | || ||||| | ||| | || ||||| |||| || || ||
Sbjct 3318715 ATGTATAGTGTGCTCATTGATACGTATGTCCGTGATCCCCAACAGCGTGACTATCTGTTC 3318774
Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392
|| ||||| || || ||||| || || || |||||| | |||| | ||
Sbjct 3318775 AATGCAATTGAAACAATGCCGGCT----GTGAAGCGCAAGGCTGACTGGGCATTATCATG 3318830
Query 125393 GATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449
||| || | |||| || | || | ||| | | | || ||||||||||| ||
Sbjct 3318831 GAT--ATC-CTCCAAGGCTGCCAACTTTGGCGAGCGGATTATTGCCTTCGCCGCCGTTGA 3318887
Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509
|||||| |||||| || || || || |||| || ||||| |||||||| || |||||
Sbjct 3318888 GGGCATTTTCTTTAGCGGCAGCTTCGCCTCCATTTTCTGGCTAAAGAAGCGTGGCCTCAT 3318947
Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569
||| || |||| | || ||| | || || || || |||||| | |||||||||||
Sbjct 3318948 GCCTGGCTTGACCTTCTCCAATGAGCTAATCTCGCGCGATGAGGGCTTGCACTGTGACTT 3319007
Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAG 125627
|||| | | |||| ||| | | || ||||| | ||||| |||
Sbjct 3319008 TGCCGTGTTGATGTTCCGCCATT---TG--------GTGCAACGTCCCAGCCGTGAGCGC 3319056
Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687
|||| ||| | ||||| || | ||| ||||| ||||| || || || | ||
Sbjct 3319057 ATCATTGCAATTATTGAGGATGCTGTCAAGATTGAACAGGAGTTCCTCACAGATGCTCTG 3319116
Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
|| || | | ||||||||||||||||| || |||| |||||||| ||||| |||||
Sbjct 3319117 CCAGTTAACTTGATTGGCATGAACTGCGCTCTGATGTCAGAGTACATTGAGTTCGTGGCT 3319176
Query 125748 GATCGTCTACTGTACGAG-TTGAT-TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805
||||| || ||| ||| ||| | ||| | || || || || | |||||||| ||
Sbjct 3319177 GATCGCCTGCTGGTGGAGCTTGGTGTGG--GAAAAATCTATAATACAAAGAATCCATTGA 3319234
Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCG 125865
|||||| | || || | || || || || ||||| || |||||||| || |||
Sbjct 3319235 CATTCATGGAAATGATTTCGTTGGACGGAAAAACTAACTTCTTTGAGAAGAAAGTGGGCG 3319294
Query 125866 AGTACAAACGCTACGGTGTCGGTGTCAATTTGGAGGATAATGTGTTTAAGATTAG-TGAG 125924
|||| ||||| |||||| ||| ||||||||||||| | ||||| ||
Sbjct 3319295 AGTATCAACGCATGGGTGTCACCTCGAATCGTCTGGATAATGTGTTT-ACATTAGATGCA 3319353
Query 125925 GATTTTTA 125932
||||||||
Sbjct 3319354 GATTTTTA 3319361
>seq5
Length=23724088
Score = 150 bits (166), Expect = 3e-31
Identities = 672/1055 (64%), Gaps = 67/1055 (6%)
Strand=Plus/Plus
Query 126665 CCAAT-TTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACA 126723
||||| || || ||| ||||||| || | || | ||| |||||||| ||| | |
Sbjct 16814417 CCAATCTTGAGCGCAGCATCAATGAAGCCAACCACGCGCTCAATGTCCTTCTCGACCAGA 16814476
Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783
||||| || || | ||| || || || | | ||||| ||| | | ||| ||||
Sbjct 16814477 CCACGTGTGGTTAGCGCTGGTGTGCCAAAGCGAATGCCCGATGGATTTATGGCGGACTTG 16814536
Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843
|| ||||| || ||||| || ||||| || || | | ||||| ||| |||| |||
Sbjct 16814537 TCGCCGGGCACAGTGTTCTTATTGCAGGCAATGCCCACCTCCTCGAGTATGAGCTCAGCC 16814596
Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903
|| || | || ||| | ||||||| ||| || || | ||||||||||||||| |||
Sbjct 16814597 TTGGCACCGGTTAGACCCGCGCTGCGCACATCGACCAGCACCAGATGCACATCGGTGCCG 16814656
Query 126904 CCAGTGGTGACGGTGTAGCCTC-GTGAAACGAGTCCCTCTGC-CAACAACTGTGCATTTC 126961
||||||| || ||||| || | | || |||| ||| || || || | |||
Sbjct 16814657 CCAGTGGCCACCTGATAGCCCAAGTCCATCAAG-CCCT-TGCACAGTGTCT-TGGAGTTC 16814713
Query 126962 G-CACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTG 127020
|| ||| | || |||| ||||| | || ||||||| | | ||||||
Sbjct 16814714 TTCAGCACCTGCGCCTGATAGACCTTGAACTCGGGCGTCTTGGCCTGCTTAAAGGCGGTG 16814773
Query 127021 GCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGG----- 127075
|| || | ||||||| | || || || ||||||||||| || ||||| |
Sbjct 16814774 GCAATGCCGGCAATCGCATTGTTATGTGGACCACCTTGCAGCGATGGGAACACCGACTGA 16814833
Query 127076 --------CTCGTTCA--------ATTTCCTGCTC-----------TAGTGAT------- 127101
||| | || || ||| ||| | ||| |
Sbjct 16814834 TTGATGCGCTCCTCCAGATCGTACATAACCTTCTCGCCATTGGGCTTGGTGCTGCGCACG 16814893
Query 127102 ---TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTG 127158
|||||| | |||||||| ||||| || ||||||| || |||||||| || || |||
Sbjct 16814894 CCCTTGCGGAAGAAGATGACACCGGCGCGTGGACCTCGCAGCGTCTTGTGTGTGGTGGTG 16814953
Query 127159 GTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA 127218
||||||||||| ||||| || || ||||| | | | |||| || ||| ||
Sbjct 16814954 GTCACAATGTCGGCGTACTCGAAAGGCGAGGGAATCTGCTCGGCGGCAACCAGGCCAGCG 16815013
Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278
| || || || || ||||| || ||| ||| | | || |||| ||||| ||
Sbjct 16815014 ACATGCGCCATGTCAGCCATAAGATAGGCGCCCACCTCGTCACAGATCTTGCGGAAGCGC 16815073
Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338
||||||| | || | |||||| ||||||| ||||| | | || |||
Sbjct 16815074 TCGTAGTCCAGCAGACGTGCATAGCAGGACATGCCGGCAATGATAATCTGTGGACGGAA- 16815132
Query 127339 AGATTG-GCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397
|| | || |||||| | |||| | ||||| | || || |||| || | ||||||
Sbjct 16815133 AGTGCGCGCCGCCTCGGCCATTTTGTCGTAGTCTATGATGCCCGTCTCGGGGTTCACCTT 16815192
Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTTGCG----------GAA 127445
||| |||||||| || || || | ||||| || || | |||| | |||
Sbjct 16815193 GTAGGGCATGCTCTCAAAGAATATGGATGTGGCCGAGATGCGTTTAGTGGGTGTAAAGAA 16815252
Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505
||||| |||| ||||| || ||||||| || | |||||||| | | | || ||
Sbjct 16815253 ACCGTGGGTCAAATGGCCGCCATCGGGCAAGTCCAAGCCCATGATGCGATCATGTGGACG 16815312
Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565
| | || || |||||||| | || ||| ||||| || || || || ||| |
Sbjct 16815313 CAGCACGCCCGTATACACGGCCAGATTAGCCGGTGAGCCGGAATAGGGCTGCACATTGGC 16815372
Query 127566 TCCCCATTCGGACT-CGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623
||||| | | || ||| ||| |||||| ||| || || || |||||| || |
Sbjct 16815373 GCCCCACT-GTTCTGCGTCCAAGTTGAACAACTCCAAGCCA-CGTGTCTGTGCCAGGCAT 16815430
Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658
|| || |||| || ||||| || || ||||||||
Sbjct 16815431 TCAATCTGATCAATGAACTCATTGCCGCCATAGTA 16815465
>seq1
Length=33300182
Score = 145 bits (160), Expect = 1e-29
Identities = 476/733 (65%), Gaps = 10/733 (1%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|| ||| |||| ||||| | || ||||| ||| | ||||||||||| |||||| |
Sbjct 20734503 CCGCTGCTGACCACCAAAAAGGTATTTGTACGCGGCATTATCGAGGAGCTTTTGTGGTTT 20734562
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGCGG 70014
|| || |||||||||||| |||| || | |||| || | ||||||| |
Sbjct 20734563 GTTAAAGGCCAGACCAATGCCAAGTTGCTGCAGGC-AAAGAACGTGCGCATTTGGGATGC 20734621
Query 70015 CAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073
|||||| | ||| | |||| | ||| |||||| ||| | | || || |||
Sbjct 20734622 CAACAGCAATCGT-GAGTTTCTTGATAAATGCGGCTTTGTGGACCGTGAGGAAGGTGATT 20734680
Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133
|||| || ||||| || ||||||||| | |||| || | ||||| ||| |
Sbjct 20734681 TGGGTCCCGTGTATGGTTTCCAGTGGCGTCACTTTGGTGCGGAGTATCGCACCTGTAATG 20734740
Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT---CAAGA 70190
|| || || || || ||||||| | ||| | ||| | || | |||||
Sbjct 20734741 ATGAATACAGCGGCCAAGGCATTGATCAGCTCCAGGAGGTTATTAATACCTTGCGCAAGA 20734800
Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250
||||||| ||| | | ||| |||||| | | |||||||| ||| | | | |||
Sbjct 20734801 ---ATCCAACTGATCGTCGCATCATAATGTCCGCCTGGAATCCCATTGATATACCCAAAA 20734857
Query 70251 TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCAT 70310
||||||| || || || ||||| ||| ||||| || | | |||| || | || |
Sbjct 20734858 TGGCACTGCCGCCTTGCCACTGCCTGGTGCAGTTCTATGTGGCCAATGGTGAACTCTCCT 20734917
Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370
| | ||||| | || ||||||||||| || || || ||||| ||||||||| ||
Sbjct 20734918 GTCAGCTTTATCAACGCAGCGCCGACATGGGACTGGGAGTTCCCTTCAACATTGCATCCT 20734977
Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430
|| | | | || | ||||| || || | || ||| |||| | ||| || | |
Sbjct 20734978 ATGCGTTTCTTACCTATATGATAGCCCATGTAACGGGCTTGAAGACAGGCGACTTTATCC 20735037
Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490
| || ||||||| ||||| || ||| ||||| | |||||||| | | || |||
Sbjct 20735038 ATACGCTTGGCGATGCTCATGTCTATAAGAATCATGTGGAGCCATTGAGAGAACAGCTCA 20735097
Query 70491 AACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACA 70550
|||| | ||||| | || ||||| || | ||| | | ||| | ||||||||
Sbjct 20735098 AACGTGTGCCGAAGTCATTCCCCAAACTTCAAATTGTGGGCGAGGTTAAGAATATTGAGG 20735157
Query 70551 GTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGG 70610
|||| || || | || | ||| ||| |||||| ||| ||| ||| ||||
Sbjct 20735158 ACTTTACCTATGAGCACTTCAAGATAGAAGATTACGACCCAGCGCCTGTCATTAAAATGG 20735217
Query 70611 TTCTGGCTGTTTA 70623
| |||| |||||
Sbjct 20735218 ATATGGCCGTTTA 20735230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059144420560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |