Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 251 1e-61 seq5 150 3e-31 seq1 145 1e-29 >seq2 Length=22510139 Score = 251 bits (278), Expect = 1e-61 Identities = 609/908 (67%), Gaps = 38/908 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | ||||| |||||||| || ||||| || |||||||| |||||| || || | Sbjct 3318479 AGGCCGAAGCCTCATTTTGGACTGTGGAAGAAGTGGATCTGTCTAAGGACATGACTGACT 3318538 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||| ||| | || || | |||||| | ||||| || || | ||||| || || | Sbjct 3318539 GGGAA---CGTCTTACAGACAATGAGCGTCACTTTATTTCACATGTGTTGGCATTTTTCG 3318595 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACC 125216 | | ||| ||||| || ||||| || || ||| |||| || || |||||| || Sbjct 3318596 CAGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAG-CGCTTTAGTCAAGAAGTGCAG 3318654 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || |||||| |||||||| |||||||| || ||| ||||| || |||||||| Sbjct 3318655 ATAACAGAGGCACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATGTCCACTCGGAG 3318714 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 ||||| | || ||||| | ||| | || ||||| |||| || || || Sbjct 3318715 ATGTATAGTGTGCTCATTGATACGTATGTCCGTGATCCCCAACAGCGTGACTATCTGTTC 3318774 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 || ||||| || || ||||| || || || |||||| | |||| | || Sbjct 3318775 AATGCAATTGAAACAATGCCGGCT----GTGAAGCGCAAGGCTGACTGGGCATTATCATG 3318830 Query 125393 GATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||| || | |||| || | || | ||| | | | || ||||||||||| || Sbjct 3318831 GAT--ATC-CTCCAAGGCTGCCAACTTTGGCGAGCGGATTATTGCCTTCGCCGCCGTTGA 3318887 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||| |||||| || || || || |||| || ||||| |||||||| || ||||| Sbjct 3318888 GGGCATTTTCTTTAGCGGCAGCTTCGCCTCCATTTTCTGGCTAAAGAAGCGTGGCCTCAT 3318947 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || |||| | || ||| | || || || || |||||| | ||||||||||| Sbjct 3318948 GCCTGGCTTGACCTTCTCCAATGAGCTAATCTCGCGCGATGAGGGCTTGCACTGTGACTT 3319007 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAG 125627 |||| | | |||| ||| | | || ||||| | ||||| ||| Sbjct 3319008 TGCCGTGTTGATGTTCCGCCATT---TG--------GTGCAACGTCCCAGCCGTGAGCGC 3319056 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| ||| | ||||| || | ||| ||||| ||||| || || || | || Sbjct 3319057 ATCATTGCAATTATTGAGGATGCTGTCAAGATTGAACAGGAGTTCCTCACAGATGCTCTG 3319116 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || | | ||||||||||||||||| || |||| |||||||| ||||| ||||| Sbjct 3319117 CCAGTTAACTTGATTGGCATGAACTGCGCTCTGATGTCAGAGTACATTGAGTTCGTGGCT 3319176 Query 125748 GATCGTCTACTGTACGAG-TTGAT-TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805 ||||| || ||| ||| ||| | ||| | || || || || | |||||||| || Sbjct 3319177 GATCGCCTGCTGGTGGAGCTTGGTGTGG--GAAAAATCTATAATACAAAGAATCCATTGA 3319234 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCG 125865 |||||| | || || | || || || || ||||| || |||||||| || ||| Sbjct 3319235 CATTCATGGAAATGATTTCGTTGGACGGAAAAACTAACTTCTTTGAGAAGAAAGTGGGCG 3319294 Query 125866 AGTACAAACGCTACGGTGTCGGTGTCAATTTGGAGGATAATGTGTTTAAGATTAG-TGAG 125924 |||| ||||| |||||| ||| ||||||||||||| | ||||| || Sbjct 3319295 AGTATCAACGCATGGGTGTCACCTCGAATCGTCTGGATAATGTGTTT-ACATTAGATGCA 3319353 Query 125925 GATTTTTA 125932 |||||||| Sbjct 3319354 GATTTTTA 3319361 >seq5 Length=23724088 Score = 150 bits (166), Expect = 3e-31 Identities = 672/1055 (64%), Gaps = 67/1055 (6%) Strand=Plus/Plus Query 126665 CCAAT-TTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACA 126723 ||||| || || ||| ||||||| || | || | ||| |||||||| ||| | | Sbjct 16814417 CCAATCTTGAGCGCAGCATCAATGAAGCCAACCACGCGCTCAATGTCCTTCTCGACCAGA 16814476 Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783 ||||| || || | ||| || || || | | ||||| ||| | | ||| |||| Sbjct 16814477 CCACGTGTGGTTAGCGCTGGTGTGCCAAAGCGAATGCCCGATGGATTTATGGCGGACTTG 16814536 Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843 || ||||| || ||||| || ||||| || || | | ||||| ||| |||| ||| Sbjct 16814537 TCGCCGGGCACAGTGTTCTTATTGCAGGCAATGCCCACCTCCTCGAGTATGAGCTCAGCC 16814596 Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903 || || | || ||| | ||||||| ||| || || | ||||||||||||||| ||| Sbjct 16814597 TTGGCACCGGTTAGACCCGCGCTGCGCACATCGACCAGCACCAGATGCACATCGGTGCCG 16814656 Query 126904 CCAGTGGTGACGGTGTAGCCTC-GTGAAACGAGTCCCTCTGC-CAACAACTGTGCATTTC 126961 ||||||| || ||||| || | | || |||| ||| || || || | ||| Sbjct 16814657 CCAGTGGCCACCTGATAGCCCAAGTCCATCAAG-CCCT-TGCACAGTGTCT-TGGAGTTC 16814713 Query 126962 G-CACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTG 127020 || ||| | || |||| ||||| | || ||||||| | | |||||| Sbjct 16814714 TTCAGCACCTGCGCCTGATAGACCTTGAACTCGGGCGTCTTGGCCTGCTTAAAGGCGGTG 16814773 Query 127021 GCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGG----- 127075 || || | ||||||| | || || || ||||||||||| || ||||| | Sbjct 16814774 GCAATGCCGGCAATCGCATTGTTATGTGGACCACCTTGCAGCGATGGGAACACCGACTGA 16814833 Query 127076 --------CTCGTTCA--------ATTTCCTGCTC-----------TAGTGAT------- 127101 ||| | || || ||| ||| | ||| | Sbjct 16814834 TTGATGCGCTCCTCCAGATCGTACATAACCTTCTCGCCATTGGGCTTGGTGCTGCGCACG 16814893 Query 127102 ---TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTG 127158 |||||| | |||||||| ||||| || ||||||| || |||||||| || || ||| Sbjct 16814894 CCCTTGCGGAAGAAGATGACACCGGCGCGTGGACCTCGCAGCGTCTTGTGTGTGGTGGTG 16814953 Query 127159 GTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA 127218 ||||||||||| ||||| || || ||||| | | | |||| || ||| || Sbjct 16814954 GTCACAATGTCGGCGTACTCGAAAGGCGAGGGAATCTGCTCGGCGGCAACCAGGCCAGCG 16815013 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 | || || || || ||||| || ||| ||| | | || |||| ||||| || Sbjct 16815014 ACATGCGCCATGTCAGCCATAAGATAGGCGCCCACCTCGTCACAGATCTTGCGGAAGCGC 16815073 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 ||||||| | || | |||||| ||||||| ||||| | | || ||| Sbjct 16815074 TCGTAGTCCAGCAGACGTGCATAGCAGGACATGCCGGCAATGATAATCTGTGGACGGAA- 16815132 Query 127339 AGATTG-GCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 || | || |||||| | |||| | ||||| | || || |||| || | |||||| Sbjct 16815133 AGTGCGCGCCGCCTCGGCCATTTTGTCGTAGTCTATGATGCCCGTCTCGGGGTTCACCTT 16815192 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTTGCG----------GAA 127445 ||| |||||||| || || || | ||||| || || | |||| | ||| Sbjct 16815193 GTAGGGCATGCTCTCAAAGAATATGGATGTGGCCGAGATGCGTTTAGTGGGTGTAAAGAA 16815252 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 ||||| |||| ||||| || ||||||| || | |||||||| | | | || || Sbjct 16815253 ACCGTGGGTCAAATGGCCGCCATCGGGCAAGTCCAAGCCCATGATGCGATCATGTGGACG 16815312 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | | || || |||||||| | || ||| ||||| || || || || ||| | Sbjct 16815313 CAGCACGCCCGTATACACGGCCAGATTAGCCGGTGAGCCGGAATAGGGCTGCACATTGGC 16815372 Query 127566 TCCCCATTCGGACT-CGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| | | || ||| ||| |||||| ||| || || || |||||| || | Sbjct 16815373 GCCCCACT-GTTCTGCGTCCAAGTTGAACAACTCCAAGCCA-CGTGTCTGTGCCAGGCAT 16815430 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 || || |||| || ||||| || || |||||||| Sbjct 16815431 TCAATCTGATCAATGAACTCATTGCCGCCATAGTA 16815465 >seq1 Length=33300182 Score = 145 bits (160), Expect = 1e-29 Identities = 476/733 (65%), Gaps = 10/733 (1%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 || ||| |||| ||||| | || ||||| ||| | ||||||||||| |||||| | Sbjct 20734503 CCGCTGCTGACCACCAAAAAGGTATTTGTACGCGGCATTATCGAGGAGCTTTTGTGGTTT 20734562 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGCGG 70014 || || |||||||||||| |||| || | |||| || | ||||||| | Sbjct 20734563 GTTAAAGGCCAGACCAATGCCAAGTTGCTGCAGGC-AAAGAACGTGCGCATTTGGGATGC 20734621 Query 70015 CAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073 |||||| | ||| | |||| | ||| |||||| ||| | | || || ||| Sbjct 20734622 CAACAGCAATCGT-GAGTTTCTTGATAAATGCGGCTTTGTGGACCGTGAGGAAGGTGATT 20734680 Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||| || ||||| || ||||||||| | |||| || | ||||| ||| | Sbjct 20734681 TGGGTCCCGTGTATGGTTTCCAGTGGCGTCACTTTGGTGCGGAGTATCGCACCTGTAATG 20734740 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT---CAAGA 70190 || || || || || ||||||| | ||| | ||| | || | ||||| Sbjct 20734741 ATGAATACAGCGGCCAAGGCATTGATCAGCTCCAGGAGGTTATTAATACCTTGCGCAAGA 20734800 Query 70191 CCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAA 70250 ||||||| ||| | | ||| |||||| | | |||||||| ||| | | | ||| Sbjct 20734801 ---ATCCAACTGATCGTCGCATCATAATGTCCGCCTGGAATCCCATTGATATACCCAAAA 20734857 Query 70251 TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCAT 70310 ||||||| || || || ||||| ||| ||||| || | | |||| || | || | Sbjct 20734858 TGGCACTGCCGCCTTGCCACTGCCTGGTGCAGTTCTATGTGGCCAATGGTGAACTCTCCT 20734917 Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370 | | ||||| | || ||||||||||| || || || ||||| ||||||||| || Sbjct 20734918 GTCAGCTTTATCAACGCAGCGCCGACATGGGACTGGGAGTTCCCTTCAACATTGCATCCT 20734977 Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430 || | | | || | ||||| || || | || ||| |||| | ||| || | | Sbjct 20734978 ATGCGTTTCTTACCTATATGATAGCCCATGTAACGGGCTTGAAGACAGGCGACTTTATCC 20735037 Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490 | || ||||||| ||||| || ||| ||||| | |||||||| | | || ||| Sbjct 20735038 ATACGCTTGGCGATGCTCATGTCTATAAGAATCATGTGGAGCCATTGAGAGAACAGCTCA 20735097 Query 70491 AACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACA 70550 |||| | ||||| | || ||||| || | ||| | | ||| | |||||||| Sbjct 20735098 AACGTGTGCCGAAGTCATTCCCCAAACTTCAAATTGTGGGCGAGGTTAAGAATATTGAGG 20735157 Query 70551 GTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGG 70610 |||| || || | || | ||| ||| |||||| ||| ||| ||| |||| Sbjct 20735158 ACTTTACCTATGAGCACTTCAAGATAGAAGATTACGACCCAGCGCCTGTCATTAAAATGG 20735217 Query 70611 TTCTGGCTGTTTA 70623 | |||| ||||| Sbjct 20735218 ATATGGCCGTTTA 20735230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059144420560