Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=33300182 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| |||| || ||||| ||||| ||||| || || |||| | | | || || Sbjct 5269451 CACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCTTC 5269392 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| ||| || ||||||||||| || || | || || |||||||| || Sbjct 5269391 CAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG 5269332 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||| || ||| || || || |||| || || ||||| || || || Sbjct 5269331 AATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTT 5269272 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||| ||||| ||||| || ||||| || Sbjct 5269271 ACCCGTAAGGGTTTTAACGAAGATCTGCATCTT 5269239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777576689388