Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 172 1e-37 seq5 118 2e-21 seq2 109 1e-18 >seq1 Length=33300182 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||||||||| || ||||| | ||| ||||| | ||| || ||| Sbjct 5269438 GTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCTTCCAATTGCTTGCCA 5269379 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | |||||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 5269378 GCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 5269319 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || |||||||| ||||| ||| Sbjct 5269318 ACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 5269259 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||||||| || Sbjct 5269258 TTAACGAAGATCTGCATCTT 5269239 >seq5 Length=23724088 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||| ||||| ||||| | || || || || || || ||| Sbjct 5413768 GTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCAAGCTGCTTGCCA 5413709 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||| || || || || || || || || ||||||||||| || || Sbjct 5413708 GCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 5413649 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| ||| || || || | || || ||||| ||||| | ||| Sbjct 5413648 ACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGTCTTGCCAGTTAAAGTT 5413589 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||||||| || Sbjct 5413588 TTGACGAAAATCTGCATCTT 5413569 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| |||||||| ||||| | || || || || || || ||| Sbjct 5414452 GTTGACTCCTTCTGGATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCA 5414393 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||| || || || ||||| || ||||||||||| || || Sbjct 5414392 GCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTA 5414333 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || ||||| || || || ||||| ||||| | || Sbjct 5414332 ACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTC 5414273 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 5414272 TTGACGAAGATTTGCAT 5414256 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||| ||||| ||||| | || || || || || || ||| Sbjct 5413996 GTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCA 5413937 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||| || || || ||||| || ||||||||||| || || Sbjct 5413936 GCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTA 5413877 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || ||||| || || || ||||| ||||| | || Sbjct 5413876 ACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTC 5413817 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 5413816 TTGACGAAGATTTGCAT 5413800 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||| ||||| ||||| | || || || || || || ||| Sbjct 5414224 GTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCA 5414165 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||| || || || ||||| || ||||||||||| || || Sbjct 5414164 GCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTA 5414105 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || || ||||| || || || ||||| ||||| | || Sbjct 5414104 ACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTC 5414045 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 5414044 TTGACGAAGATTTGCAT 5414028 >seq2 Length=22510139 Score = 109 bits (120), Expect = 1e-18 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||||| || || ||||||||||| |||||||| ||||||||| | ||| | | || | Sbjct 3318479 AGGCCGAAGCCTCATTTTGGACTGTGGAAGAAGTGGATCTGTCTAAGGACATGACTGACT 3318538 Query 268812 GGAAAAAT-TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 || || | ||| | || | || | ||||| || || | | || ||||| ||| Sbjct 3318539 GGGAACGTCTTACAGACA-ATGAGCGTCACTTTATTTCACATGTGTTGGCATTTTTCGCA 3318597 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | |||||| || || || || || || || ||| || ||||||| || ||||| Sbjct 3318598 GCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCGCTTTAGTCAAGAAGTGCAGATA 3318657 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 | || || | || ||||| ||||||||||| || || || ||| | || || |||||| Sbjct 3318658 ACAGAGGCACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATGTCCACTCGGAGATG 3318717 Query 268991 TACAGTCTATTAATAGATACTTAT 269014 || ||| | | || ||||| ||| Sbjct 3318718 TATAGTGTGCTCATTGATACGTAT 3318741 Score = 109 bits (120), Expect = 1e-18 Identities = 185/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 238626 GGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACT-AG 238684 |||||||||||| | || ||||| ||||||||||| || || || ||||| |||||| || Sbjct 17628704 GGCAAAATGCATGGCTTTTTACGCATGTATTGGGCCAAGAAAATTCTTGAGTGGACTGAG 17628763 Query 238685 ATCTCCAAAGGAAGCTCTTAGA-TATAGTATTTATCTGAACGATAAATACGAACTCGACG 238743 | |||| || ||| || || ||| ||| | || || |||||||| ||||| | Sbjct 17628764 A-CTCCTGAGCTGGCT-TTGGAGTATGCTATATTGCTTAATGATAAATATAGTCTCGATG 17628821 Query 238744 GTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGG 238803 || |||||||| || || || || || |||||||| || | || |||| ||| | Sbjct 17628822 GTCGTGATCCTAATGGTTATGTGGGCTGCATGTGGTCCATCGGCGGCATACATGATCAAG 17628881 Query 238804 CATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGA 238863 ||| ||| | | || ||||| || || | || ||||| ||| |||| ||| Sbjct 17628882 GTTGGAAAGAGCGTGCCATCTTTGGTAAGATTCGCTATATGAACTATCAAGGCTGCAAGC 17628941 Query 238864 AAAAATTTGATGTAAATGCTTTT 238886 || |||||||| ||||| ||| Sbjct 17628942 GCAAGTTTGATGTGAATGCCTTT 17628964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398311486248