Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=33300182 Score = 120 bits (132), Expect = 3e-22 Identities = 183/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 ||||| || ||||| || | |||||||| || ||||| |||| || |||| | Sbjct 8647820 CCGGTGGAGCCGAAGCCCGCTTCGCCGCGTTCAGTGTCCTCCAGCTTGTCGACCTGCTCC 8647879 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | |||| | | ||||| || || || | |||||| || | || || ||| ||| Sbjct 8647880 AATTCTGGATAGAAGATGCGCTCACAAATAAACTGAGCAATGCGATCACCACGCTTCACC 8647939 Query 5360 TCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 |||||||| || ||||| || |||| || || || | |||||| |||||||||| Sbjct 8647940 TCAAAGTCC--GTCTCCGAGTGATTGAACAATACAACGCCCAGATTGCCGCGGTAGTCTT 8647997 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 | || | |||||| ||||| || || ||||| | || ||||| | || |||||||| | Sbjct 8647998 CATCAACAACGCCGGCGCCGACATCAATAAAATTCTTTACCGCCAATCCAGAACGTGGAG 8648057 Query 5478 CTATGCGTCCGTAGCAACC 5496 | | |||||| ||| |||| Sbjct 8648058 CAACGCGTCCATAGGAACC 8648076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447750366418720