Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 >seq1 Length=33300182 Score = 109 bits (120), Expect = 5e-19 Identities = 245/361 (68%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || || ||||| ||||| || || |||| | ||| || || ||||| | |||| Sbjct 8647817 ACACCGGTGGAGCCGAAGCCCGCTTCGCCGCGTTCAGTGTCCTCCAGCTTGTCGACCTGC 8647876 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 |||| || || | | || |||||| || || | ||| || || || || || ||| Sbjct 8647877 TCCAATTCTGGATA-GAAGATGCGCTCACAAATAAACTGAGCAATGCGATCACCACGCTT 8647935 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| || || | | |||| ||||||| || ||||||| |||||||||||| Sbjct 8647936 CACCTCAAAGTCCGTCT--CCGAGTGATTGAACAATACAACGCCCAGATTGCCGCGGTAG 8647993 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || | || | ||||| ||||| || || || || | ||| ||||||| || || || Sbjct 8647994 TCTTCATCAACAACGCCGGCGCCGACATCAATAAAATTCTTTACCGCCAATCCAGAACGT 8648053 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 ||||| ||||| || ||| | || || || | || | |||||| || || | || | Sbjct 8648054 GGAGCAACGCGTCCATAGGAACCCTCTGGCACTTGCACCTGCAGATCTGTCTTGA-CAAT 8648112 Query 5798 CGCC-GACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTCGTACCCGGCCGC 5856 |||| |||| ||| || || | |||| ||||||||| | ||| | ||||| || Sbjct 8648113 CGCCTTCCCGCGCGCCGGCACAACCAAGTCATAAGCGCTGCGCAAATCGAAGCCGGCTGC 8648172 Query 5857 C 5857 | Sbjct 8648173 C 8648173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054368552272