Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq1 86.0 5e-12 >seq5 Length=23724088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| || || || || |||||| || ||||| ||||||| || || || | || Sbjct 5413783 AACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA-AAGAGTACGTCCATC 5413725 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||| |||||||| || | |||| ||||||||||| || || | || |||||||| Sbjct 5413724 CTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTC 5413665 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||||| | | | |||||||| | || ||| || | || || || Sbjct 5413664 CTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATTGT 5413605 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || | |||||| || |||||||||||| Sbjct 5413604 CTTGCCAGTTAAAGTTTTGACGAAAATCTGCATC 5413571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| || || || || |||||| || ||||| ||||||| || || || | || Sbjct 5414011 AACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA-AAGAGTACGTCCATC 5413953 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || |||| |||||||||||||| || | || ||||||||| Sbjct 5413952 CTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 5413893 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | |||||||| | | ||| ||||| || ||||| Sbjct 5413892 CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGT 5413833 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | || || || || || ||||| Sbjct 5413832 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5413800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| || || || || |||||| || ||||| ||||||| || || || | || Sbjct 5414239 AACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA-AAGAGTACGTCCATC 5414181 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || |||| |||||||||||||| || | || ||||||||| Sbjct 5414180 CTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 5414121 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | |||||||| | | ||| ||||| || ||||| Sbjct 5414120 CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGT 5414061 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | || || || || || ||||| Sbjct 5414060 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5414028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 || || ||||| || || |||||| || || ||||| |||| || || || | || Sbjct 5414467 AAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGA-AAGAGTACGTCCATC 5414409 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || |||| |||||||||||||| || | || ||||||||| Sbjct 5414408 CTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTGTC 5414349 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||| | | | |||||||| | | ||| ||||| || ||||| Sbjct 5414348 CTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATGGT 5414289 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | || || || || || ||||| Sbjct 5414288 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 5414256 >seq1 Length=33300182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 90657 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 90716 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || ||||||||||| ||| || | || |||||||||||||| || Sbjct 90717 CAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 90776 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || ||||| || || ||||| | | | ||||| || | | ||| Sbjct 90777 AATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 90836 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| ||||||||||| || |||||| || Sbjct 90837 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 2542955 ACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 2542896 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || ||||||||||| ||| || | || |||||||||||||| || Sbjct 2542895 CAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 2542836 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || ||||| || || ||||| | | | ||||| || | | ||| Sbjct 2542835 AATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 2542776 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| ||||||||||| || |||||| || Sbjct 2542775 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251169196006