Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 125 4e-24 seq5 118 6e-22 seq4 116 2e-21 >seq2 Length=22510139 Score = 125 bits (138), Expect = 4e-24 Identities = 86/97 (89%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||| || |||||| | ||||||||||| |||||||||| |||||||||||||| Sbjct 11585827 TAGAATAAA--AAAAATGTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 11585770 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||||||||| Sbjct 11585769 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 11585733 Score = 125 bits (138), Expect = 4e-24 Identities = 90/103 (87%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| || ||||| | | ||||||||||| |||||||||| ||||||||| Sbjct 21400245 AAAAATAAAATAAA-AAAAATTTAGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 21400187 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| |||||||||||||||||||||| Sbjct 21400186 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 21400144 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 21456902 AAAAAATGATTTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 21456961 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||||||||||| Sbjct 21456962 CGCTCTAACCAACTGAGCTAATGGGCCGT 21456990 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 20403309 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 20403250 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 20403249 CTGAGCTAATGGGCC 20403235 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||| Sbjct 11577315 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTTTAACCAAC 11577256 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| || Sbjct 11577255 TGAGCTAATGGGCCGTTGA 11577237 >seq5 Length=23724088 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6190653 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6190712 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||||||||||| Sbjct 6190713 CTGAGCTAATGGGCCGT 6190729 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6192850 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 6192791 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 6192790 CTGAGCTAATGGGCCG 6192775 >seq4 Length=26871514 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10489097 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10489038 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 10489037 TGAGCTAATGGGCCGT 10489022 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491180878456