Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 8e-29
seq5 116 3e-21
seq3 95.1 1e-14
>seq1
Length=33300182
Score = 141 bits (156), Expect = 8e-29
Identities = 169/228 (74%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| || || |||||||| | ||||| ||| || ||| ||| ||
Sbjct 5269451 CACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGACAGAGTACGACCATCTTC 5269392
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || || || | |||||||| | ||| |||||||||||||| ||||||||||| |
Sbjct 5269391 CAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG 5269332
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || ||||| ||| ||| || | | ||||| |||| |||||||| ||
Sbjct 5269331 AATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTT 5269272
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTTGAG 95025
|| ||||| ||||| || ||||||||||| ||||||||| | || ||
Sbjct 5269271 ACCCGTAAGGGTTTTAACGAAGATCTGCAT-CTTACAACACACTTAAG 5269225
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| ||| || ||||| || | ||| || ||| || ||| | ||| ||
Sbjct 90675 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 90734
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| || | ||||||||||| ||||| || |||||||| |
Sbjct 90735 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 90794
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | | ||||| || | |||||||| ||
Sbjct 90795 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 90854
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || |||||||||||||| |||||
Sbjct 90855 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 90884
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| ||| || ||||| || | ||| || ||| || ||| | ||| ||
Sbjct 2542937 CACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTC 2542878
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| || | ||||||||||| ||||| || |||||||| |
Sbjct 2542877 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCTTG 2542818
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | | ||||| || | |||||||| ||
Sbjct 2542817 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 2542758
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || |||||||||||||| |||||
Sbjct 2542757 GCCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728
>seq5
Length=23724088
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | || || ||||| || | ||||||||| | ||| |
Sbjct 5414014 CGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA 5413955
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || || | || || || | ||||||||||| ||||||||||| |||
Sbjct 5413954 TCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTG 5413895
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||| ||| | | || |||| | | || || || | ||||||
Sbjct 5413894 TCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATG 5413835
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || ||||| | || || || ||||| |||||||
Sbjct 5413834 GTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATGC 5413798
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | || || ||||| || | ||||||||| | ||| |
Sbjct 5414242 CGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA 5414183
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || || | || || || | ||||||||||| ||||||||||| |||
Sbjct 5414182 TCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTG 5414123
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||| ||| | | || |||| | | || || || | ||||||
Sbjct 5414122 TCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACCTCGAGGGTGATG 5414063
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || ||||| | || || || ||||| |||||||
Sbjct 5414062 GTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATGC 5414026
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | || || ||||| || | ||||||||| | ||| |
Sbjct 5413786 CGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGAAAGAGTACGTCCA 5413727
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || |||| || || | ||||| ||||| |||||||| || |||
Sbjct 5413726 TCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTG 5413667
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || |||||||| | | || |||| | || || || | |||||
Sbjct 5413666 TCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAACTTCCAAGGTGATT 5413607
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| | |||||| || || ||||||||
Sbjct 5413606 GTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572
Score = 96.9 bits (106), Expect = 3e-15
Identities = 169/245 (69%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 94765 TTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824
|||||| |||| | ||| || | | ||||| ||||| || | || || ||||| ||
Sbjct 5414496 TTTAAA--TTTAAATTCCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTG 5414439
Query 94825 CACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884
| || || || | ||| |||||||||||| || || | || || || |
Sbjct 5414438 GATATTGTAGTCAGAAAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACG 5414379
Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944
||||||||||| ||||||||||| ||||| | ||| || ||||| ||| | | ||
Sbjct 5414378 CTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGT 5414319
Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004
|||| | | || || || | |||||||| || ||||| | || || || ||||| ||
Sbjct 5414318 ATCAGAGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 5414259
Query 95005 CATGC 95009
|||||
Sbjct 5414258 CATGC 5414254
>seq3
Length=28180402
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 22368810 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22368869
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22368870 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22368929
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22368930 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22368989
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22368990 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 22369038 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369097
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22369098 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369157
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22369158 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369217
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22369218 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 22369266 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369325
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22369326 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369385
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22369386 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369445
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22369446 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 22369494 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369553
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22369554 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369613
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22369614 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369673
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22369674 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | ||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 22369722 CACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22369781
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22369782 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22369841
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22369842 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22369901
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22369902 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||||| ||||| || | ||| || ||| || |||| |||||||
Sbjct 22368583 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 22368642
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22368643 AACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 22368702
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22368703 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTTG 22368762
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| |||||||||||
Sbjct 22368763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || || ||||| || | ||| || ||| || |||| ||||||
Sbjct 22369950 CACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTC 22370009
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| || ||| | ||||| | | ||||| ||||| || || || || ||||| |
Sbjct 22370010 CAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 22370069
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | | ||||| | | || || || | |||||||| ||
Sbjct 22370070 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTCTT 22370129
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
||||| | || |||||||||||||||||| ||
Sbjct 22370130 GCCAGTCAATGTCTTCACAAAGATCTGCATGGTT 22370163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291166378160
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