Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 >seq1 Length=33300182 Score = 158 bits (174), Expect = 2e-33 Identities = 361/539 (67%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 193635 GTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAG 193694 ||| | ||| | ||||| || ||| | | ||| ||| ||||| ||||| || || || Sbjct 8135844 GTTAAGCCTACGGAGATTTACAATTTGGCTGCACAATCGCATGTAAAAGTGTCTTTCGAT 8135785 Query 193695 ATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTT 193754 || || || ||| || | || ||||| |||| |||||| | ||| | || ||||| Sbjct 8135784 TTGAGTGAATACACTGCTGAGGTCGATGCCGTAGGCACTCTTCGTATATTGGACGCAGTA 8135725 Query 193755 CGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 || | | || ||||| | | |||| | |||||||| || || || ||||| Sbjct 8135724 CGCACTTGTGGCATGGAAAGATCTGTTAAGTTTTATCAGGCCTCCACGTCGGAGTTGTAT 8135665 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 ||| || | | || |||| ||| || |||||| ||||||| || |||||| Sbjct 8135664 GGTAAAGTGGTGGAAACGCCACAGAATGAACAGACCCCATTTTATCCACGATCACCTTAT 8135605 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG----G 193930 | | || ||| ||||||| | |||||| ||| || ||| | || |||| | | Sbjct 8135604 GCTTGTGCCAAGATGTATGGCTTTTGGATAGTCATCAACTATAGGGAAGCATACGACATG 8135545 Query 193931 ATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATT 193990 || | || | ||| || |||||||||||||| |||| | | || || | || Sbjct 8135544 TTTGCCTGCAA----TGGCATACTCTTCAATCACGAGAGTCCACGCCGTGGCGAAAGCTT 8135489 Query 193991 TGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA--GAAGATT 194048 ||| || || || ||||||| | | | ||||| |||| | || | | ||| ||| Sbjct 8135488 TGTGACACGCAAAATTACACGCTCTGTTGCAAAGAT-TCTGCTAAATCAAATGGAATATT 8135430 Query 194049 CTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAA 194108 || | || || ||| | | | ||| | |||||||| || || || || ||||| || Sbjct 8135429 -TTGAGCTGGGCAATTTGGACTCGAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAG 8135371 Query 194109 GCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 || |||||| | ||| |||| | ||||| || | ||||||||||||||| || ||||| Sbjct 8135370 GCCATGTGGATGATGCTGCAGCGCGATGAGCCGGCTGATTATGTGATTGCGACTGGTGA 8135312 Score = 102 bits (112), Expect = 1e-16 Identities = 201/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 193881 GCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG----GATTCCA 193936 || ||| ||||||| | |||||| ||| || ||| | || |||| | | || | Sbjct 4445268 GCCAAGATGTATGGCTTTTGGATAGTCATCAACTATAGGGAAGCATAAGACATGTTTGCC 4445209 Query 193937 CGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAAC 193996 || | ||| || |||||||||||||| |||| | | ||||| | ||||| || Sbjct 4445208 TGCAA----TGGCATACTCTTCAATCACGAGAGTCCACGCCGTGGTGAAAACTTTGTGAC 4445153 Query 193997 TCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA--GAAGATTCTTTAT 194054 || || ||||||| | | | ||||| |||| | || | | ||| ||| || | Sbjct 4445152 ACGCAAAATTACACGCTCTGTTGCAAAGAT-TCTGCTAAATCAAATGGAATATT-TTGAG 4445095 Query 194055 CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATG 194114 || || ||| | | | ||| | |||||||| || || || || ||||| || || ||| Sbjct 4445094 CTGGGCAATTTGGACTCGAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAGGCCATG 4445035 Query 194115 TGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA 194167 ||| | ||| |||| | ||||| || | ||||||||||||||| || ||||| Sbjct 4445034 TGGATGATGCTGCAGCGCGATGAGCCGGCTGATTATGTGATTGCGACTGGTGA 4444982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807555139433360