Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 >seq2 Length=22510139 Score = 113 bits (124), Expect = 5e-20 Identities = 566/895 (63%), Gaps = 25/895 (3%) Strand=Plus/Minus Query 21115 AAAAATATTTAT-TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACA 21173 |||| |||| | ||||||||| |||||||||| || |||||||| || || Sbjct 3319375 AAAATTATTCTTGTTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGG 3319316 Query 21174 TAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCA 21233 | | ||||| |||||| || | ||| | || || || || || || ||||| |||| Sbjct 3319315 TGACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCA 3319256 Query 21234 ATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACA-ACCC 21292 | || || |||||| || |||||||| | | ||| | ||||| | || ||| Sbjct 3319255 ACGAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTT-TCCCACACCA 3319197 Query 21293 AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTC 21352 || || | | | ||| || || || || || || | |||| | | || ||| Sbjct 3319196 AGCTCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTC 3319137 Query 21353 ATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCT 21412 || || ||||| || || || ||||| | ||| | || | ||| || ||| || Sbjct 3319136 ATGCCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCA 3319077 Query 21413 TCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATC 21472 || |||| || || || | || || | | || || || |||||| Sbjct 3319076 TCCTCAATAATTGCAATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATC 3319017 Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 || ||||| ||||| ||||| || ||||| | |||| ||||| || || || Sbjct 3319016 AACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTC 3318957 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGA-AAA 21591 || || ||||| | || | ||| |||| ||| || || || || || ||| | | ||| Sbjct 3318956 AAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAA-GCTGCCGCTAAA 3318898 Query 21592 GAAAATGCCCTCAACGGCAGCAAATGCAACTAATC-GTTCACCGTATGTAGATTCTTTAT 21650 |||||||||||||||||| || || |||| ||||| | || || | | | | || Sbjct 3318897 GAAAATGCCCTCAACGGCGGCGAAGGCAA-TAATCCGCTCGCCAAAGTTGGCAGCCTTGG 3318839 Query 21651 CCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAG 21710 |||||||| | |||||| | ||||| || | | ||||| ||||| | Sbjct 3318838 AGGATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTG 3318779 Query 21711 CTTTTAAAAGATGAtt----tttt-----tCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | || || |||| | | || ||| |||| || || Sbjct 3318778 CATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGT-AT--------CAATGA 3318728 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 ||||||||| || || || | ||| || ||||| ||||| ||||| ||||| || | Sbjct 3318727 GCACACTATACATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGC 3318668 Query 21822 TTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 |||||||| || || || | ||| || | | ||| ||| ||||| || || | Sbjct 3318667 GTGCCTCTGTTATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGC 3318608 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 ||||| ||| || ||||||||||| | || | ||||| | || || || ||||| | Sbjct 3318607 CATCAGAGGCTGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAA 3318548 Query 21942 ATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || ||| || | || || || | ||| |||||||| |||||||| Sbjct 3318547 GACGTTCCCAGTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAA 3318493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900760107440