Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 242 5e-59 seq1 87.8 2e-12 >seq2 Length=22510139 Score = 242 bits (268), Expect = 5e-59 Identities = 586/884 (66%), Gaps = 6/884 (1%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 |||||| || ||||||| | ||| |||||| || || | || ||||| Sbjct 3319362 TTAAAAATCTGCATCTAATGTAAACACATTATCCAGACGATTCGAGGTGACACCCATGCG 3319303 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| || || ||||| || || || || ||||||||||| ||||| || || |||| Sbjct 3319302 TTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAACGAAATCATTTC 3319243 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||| || ||||| | |||||| |||||| | || | || | || Sbjct 3319242 CATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGCTCCACCAGCAG 3319183 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 | ||| || ||||| || || || | ||||| | || ||||| || || | || Sbjct 3319182 GCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATGCCAATCAAGTT 3319123 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 |||||| ||||| | || || || || |||||||| || ||||| ||||| | Sbjct 3319122 AACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCCTCAATAATTGC 3319063 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | | | || || || | |||| ||||| |||||||| || || || Sbjct 3319062 AATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACATCAACACGGCAAAGTC 3319003 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||||| ||||| || | ||||| || ||||| || || | || ||||| || Sbjct 3319002 ACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGTCAAGCCAGGCATGAG 3318943 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 ||||||||| || ||||| || ||||| ||||| || |||||| || || || || Sbjct 3318942 GCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAAGAAAATGCCCTCAAC 3318883 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC--TGTCATGTATCCACTTTTG 33491 || || |||||||||| | ||| ||| | ||| || || |||||| | Sbjct 3318882 GGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGAGGATATCCATGATAA 3318823 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551 ||||| || ||||| || ||| ||||| ||||| || ||||| || ||||||| Sbjct 3318822 TGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGCATTGAACAGATAGTC 3318763 Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611 | | ||| ||||| ||||| || | | ||||||||| ||||| || | Sbjct 3318762 ACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATACATCTCCGAGTGGAC 3318703 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 || || || || ||||| ||||| || || || | ||||| || ||||| |||||| Sbjct 3318702 ATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGTTATCTGCACTTCTTG 3318643 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 || ||| || || ||| || ||||| || || || ||| |||||| ||||| ||||| Sbjct 3318642 ACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGCTGCGAAAAATGCCAA 3318583 Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 |||||| ||||| | || | ||| || | ||| ||| | || || || Sbjct 3318582 CACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCAGTCAGTCATGTCCTT 3318523 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||| | ||| ||||||||||| ||||||||||| || || |||| Sbjct 3318522 AGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479 >seq1 Length=33300182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63966 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 |||||||| || ||||||||||| || || |||||||| || ||||| | |||||||| Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 | ||| || || || | |||| || ||||| ||||| | | ||||| ||| |||| Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 64086 GTTACTCC 64093 || || || Sbjct 15795887 GTAACACC 15795894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947153278960