Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq1 134 1e-26 seq5 118 1e-21 >seq3 Length=28180402 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22368793 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368852 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22368853 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368912 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22368913 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368972 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22368973 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22369021 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369080 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22369081 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369140 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22369141 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369200 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22369201 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22369249 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369308 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22369309 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369368 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22369369 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369428 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22369429 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22369477 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369536 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22369537 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369596 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22369597 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369656 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22369657 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22369705 CCACCACGCAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22369764 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22369765 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22369824 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22369825 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22369884 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22369885 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | ||| |||||||| ||||||||||| ||| | Sbjct 22368565 CCACCACGCAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 22368624 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22368625 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22368684 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22368685 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22368744 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 22368745 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| ||||||||||| ||| | Sbjct 22369933 CCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 22369992 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| |||| | |||||||||||| || ||| Sbjct 22369993 AGAGTGCGTCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 22370052 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 22370053 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 22370112 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 22370113 TCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 22370160 >seq1 Length=33300182 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||||||||||| || |||||||| ||| | Sbjct 90658 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 90717 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||| ||| |||| ||||||||||| || || || Sbjct 90718 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 90777 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||||| | ||| | || || | || ||||| Sbjct 90778 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 90837 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || ||||| || || || ||||| Sbjct 90838 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 90884 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||||||||||| || |||||||| ||| | Sbjct 2542954 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2542895 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||||||||| ||| |||| ||||||||||| || || || Sbjct 2542894 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 2542835 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||||| | ||| | || || | || ||||| Sbjct 2542834 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2542775 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || ||||| || || || ||||| Sbjct 2542774 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 2542728 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| || || | ||| |||||||||||||| || || ||| | Sbjct 5269468 CCACCACGGAGGCGGAGCACCAAGTGCAGGGTGGACTCCTTTTGAATATTATAGTCGGAC 5269409 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||||| ||| |||||||||| || || || ||||| Sbjct 5269408 AGAGTACGACCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGA 5269349 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | |||||| | | |||| Sbjct 5269348 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGAC 5269290 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| ||||| |||||||| Sbjct 5269289 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTAACGAAGATCTGCAT 5269242 >seq5 Length=23724088 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| ||| || || | ||| |||||||| || ||||| ||||| Sbjct 5413799 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413740 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| || | || |||||||||||||| || || Sbjct 5413739 AAGAGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGGGG 5413680 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | ||| | ||||| | | ||| | Sbjct 5413679 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAAGGCTCAAC 5413620 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || |||| |||||| |||||||||||||| Sbjct 5413619 TTCCAAGGTGATTGTCTTGCCAGTTAAAGTTTTGACGAAAATCTGCAT 5413572 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| ||| || || | ||| |||||||| || ||||| ||||| Sbjct 5414027 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5413968 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| ||| | || ||||||||||| || || || Sbjct 5413967 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5413908 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | ||| | ||||| | || ||| | Sbjct 5413907 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5413848 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || | || || ||||| || |||||| Sbjct 5413847 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5413799 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| ||| || || | ||| |||||||| || ||||| ||||| Sbjct 5414255 GCCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGA 5414196 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| ||| | || ||||||||||| || || || Sbjct 5414195 AAGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGG 5414136 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | ||| | ||||| | || ||| | Sbjct 5414135 AATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAAC 5414076 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || | || || ||||| || |||||| Sbjct 5414075 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414027 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || ||||| | ||| |||||||| || || ||||| || Sbjct 5414482 CCGCCGCGAAGACGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATATTGTAGTCAGAA 5414423 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| | || ||||||||||| || || || Sbjct 5414422 AGAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 5414363 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | ||| | ||||| | || ||| | Sbjct 5414362 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCAATGGTATCAGAGGGCTCAACC 5414303 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || | || || ||||| || |||||| Sbjct 5414302 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATG 5414255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012764599040