Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq1 86.0 5e-12 >seq3 Length=28180402 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22368580 AGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368639 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22368640 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368699 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22368700 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22368757 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22368758 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22368791 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22368808 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22368867 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22368868 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22368927 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22368928 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22368985 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22368986 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369019 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22369036 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369095 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22369096 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369155 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22369156 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369213 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22369214 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369247 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22369264 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369323 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22369324 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369383 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22369384 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369441 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22369442 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369475 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22369492 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369551 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22369552 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369611 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22369612 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369669 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22369670 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369703 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22369720 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22369779 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22369780 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22369839 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22369840 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22369897 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || || || |||||||| Sbjct 22369898 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 22369931 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || | ||| Sbjct 22369948 AGCACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCC 22370007 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| || | || || ||||| ||||| || | |||||| ||||| Sbjct 22370008 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 22370067 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| |||| |||||||| Sbjct 22370068 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGG 22370125 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| || || ||||| |||||||| Sbjct 22370126 TCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 22370159 >seq1 Length=33300182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 90673 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 90732 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || | ||||| || || || | ||||||||||| Sbjct 90733 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 90792 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 90793 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 90850 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| || ||||| ||||| || ||||| ||| Sbjct 90851 TCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 90888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 2542939 AGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 2542880 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || | ||||| || || || | ||||||||||| Sbjct 2542879 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCTTTGTCT 2542820 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 2542819 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 2542762 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||| || ||||| ||||| || ||||| ||| Sbjct 2542761 TCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATCTTG 2542724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087970377940