Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 221 2e-52 seq1 96.9 4e-15 >seq2 Length=22510139 Score = 221 bits (244), Expect = 2e-52 Identities = 555/839 (66%), Gaps = 11/839 (1%) Strand=Plus/Minus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 || ||||| ||| || || ||||| || || || || |||||||| || || || Sbjct 3319313 ACACCCATGCGTTGATACTCGCCCACTTTCTTCTCAAAGAAGTTAGTTTTTCCGTCCAAC 3319254 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 || || |||||||||| |||||||| | |||||| |||||| | || | Sbjct 3319253 GAAATCATTTCCATGAATGTCAATGGATTCTTTGTATTATAGATTTTTCCCACACCAAGC 3319194 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | || | ||| || || || || || || | ||||| | || ||||| Sbjct 3319193 TCCACCAGCAGGCGATCAGCCACGAACTCAATGTACTCTGACATCAGAGCGCAGTTCATG 3319134 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || || | |||||||| ||||| | || || || || |||||||| ||| || || Sbjct 3319133 CCAATCAAGTTAACTGGCAGAGCATCTGTGAGGAACTCCTGTTCAATCTTGACAGCATCC 3319074 Query 32601 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 32656 ||||| | | || | | |||| | || | | || ||||| ||||| Sbjct 3319073 TCAATAATTGC----AATGATGCGCTCACGGCTGGGACGTTGCACCAAATGGCGGAACAT 3319018 Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || || || ||||| | ||||| || | |||| || ||||| || || Sbjct 3319017 CAACACGGCAAAGTCACAGTGCAAGCCCTCATCGCGCGAGATTAGCTCATTGGAGAAGGT 3318958 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 | || ||||| ||||||||||| || ||||| || ||||| || || || ||| Sbjct 3318957 CAAGCCAGGCATGAGGCCACGCTTCTTTAGCCAGAAAATGGAGGCGAAGCTGCCGCTAAA 3318898 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCA 32834 |||||| || || || || || |||||||||| | ||| ||| | ||| || | Sbjct 3318897 GAAAATGCCCTCAACGGCGGCGAAGGCAATAATCCGCTCGCCAAAGTTGGCAGCCTTGGA 3318838 Query 32835 TG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | |||||| | ||||| || ||||| || ||| |||||||| || || || Sbjct 3318837 GGATATCCATGATAATGCCCAGTCAGCCTTGCGCTTCACAGCCGGCATTGTTTCAATTGC 3318778 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| || ||||||| | | ||| ||||| |||||||| | | |||||| Sbjct 3318777 ATTGAACAGATAGTCACGCTGTTGGGGATCACGGACATACGTATCAATGAGCACACTATA 3318718 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| ||||| || | || || || || || || ||||| || ||||| | ||||| || Sbjct 3318717 CATCTCCGAGTGGACATTCTCCATCGCAATCTGGAATCCATAAAAGCAGCGTGCCTCTGT 3318658 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 ||||| |||||| || ||| || || | | || ||||| || || || ||| ||| Sbjct 3318657 TATCTGCACTTCTTGACTAAAGCGCTCAACCAGGTTCTCATTGACAATGCCATCAGAGGC 3318598 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||| ||||| ||||| |||||| ||||| | || | ||| || | ||| Sbjct 3318597 TGCGAAAAATGCCAACACATGTGAAATAAAGTGACGCTCATTGTCTGTAAGACGTTCCCA 3318538 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 ||| | || || ||||| | ||||||||||||||| ||||||||||| || || |||| Sbjct 3318537 GTCAGTCATGTCCTTAGACAGATCCACTTCTTCCACAGTCCAAAATGAGGCTTCGGCCT 3318479 >seq1 Length=33300182 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 |||||||| |||||||||||||| || || |||||||| || ||||| | |||||||| Sbjct 15795767 TTTTTTGTCTCTTTGTGTAGATTGGAAACAGCTATTCTTGCAGCTAGGAGAGCATAATCT 15795826 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 | ||| || || || | |||| || ||||| ||||| | | ||||| ||| |||| Sbjct 15795827 GCATGGTGAGTTGTTAAGCTGGCCGCGATTTCAGCTGCTAAGCTATCCAACTCTTGCGTT 15795886 Query 63941 GTTACACC 63948 || ||||| Sbjct 15795887 GTAACACC 15795894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631952477600