Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 seq1 118 9e-22 >seq2 Length=22510139 Score = 145 bits (160), Expect = 7e-30 Identities = 216/301 (72%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 50979 ATCCACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAAT 51038 || ||| | |||||| ||||| ||||| ||||||||||| | || | ||||| || Sbjct 17628958 ATTCACATCAAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGAT 17628899 Query 51039 TTTGCGTTCTTTG-AACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACA 51096 || ||||| ||| | || || || | |||| || |||||||| || |||||| Sbjct 17628898 GGCACGCTCTTTCCAAC--CTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACA 17628841 Query 51097 TAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCC 51156 ||| |||||||| |||||||| | || || | ||| || || ||||| ||||| || Sbjct 17628840 TAACCATTAGGATCACGACCATCGAGACTATATTTATCATTAAGCAATATAGCATACTCC 17628781 Query 51157 AATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATG 51216 || |||| || | | | ||||| || | ||||||||||||||| |||||||| | Sbjct 17628780 AAAGCCAGCTCAGGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAA 17628721 Query 51217 TAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGT 51274 | || ||||| |||||||| ||| ||||||| || ||||||||||| | |||| Sbjct 17628720 AAGCCATGCATTTTGCCCTCCTGCAC--AAGCTGCAGCTGCGCCGAGTTCCATAGATCGT 17628663 Query 51275 C 51275 | Sbjct 17628662 C 17628662 >seq1 Length=33300182 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || ||||| ||||||| | || || || | || Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 5269302 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5269357 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || || ||||| ||||| ||||||| ||| ||| || ||| || Sbjct 5269358 TCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTA 5269417 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || ||||| || || || ||||| Sbjct 5269418 TAATATTCAAAAGGAGTCCACCCTGCACTTGGTGCT 5269453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327968312890