Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02]
6 sequences; 135,748,557 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 7e-30
seq1 118 9e-22
>seq2
Length=22510139
Score = 145 bits (160), Expect = 7e-30
Identities = 216/301 (72%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 50979 ATCCACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAAT 51038
|| ||| | |||||| ||||| ||||| ||||||||||| | || | ||||| ||
Sbjct 17628958 ATTCACATCAAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAAGAT 17628899
Query 51039 TTTGCGTTCTTTG-AACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACA 51096
|| ||||| ||| | || || || | |||| || |||||||| || ||||||
Sbjct 17628898 GGCACGCTCTTTCCAAC--CTTGATCATGTATGCCGCCGATGGACCACATGCAGCCCACA 17628841
Query 51097 TAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCC 51156
||| |||||||| |||||||| | || || | ||| || || ||||| ||||| ||
Sbjct 17628840 TAACCATTAGGATCACGACCATCGAGACTATATTTATCATTAAGCAATATAGCATACTCC 17628781
Query 51157 AATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATG 51216
|| |||| || | | | ||||| || | ||||||||||||||| |||||||| |
Sbjct 17628780 AAAGCCAGCTCAGGAGTCTCAGTCCACTCAAGAATTTTCTTGGCCCAATACATGCGTAAA 17628721
Query 51217 TAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGT 51274
| || ||||| |||||||| ||| ||||||| || ||||||||||| | ||||
Sbjct 17628720 AAGCCATGCATTTTGCCCTCCTGCAC--AAGCTGCAGCTGCGCCGAGTTCCATAGATCGT 17628663
Query 51275 C 51275
|
Sbjct 17628662 C 17628662
>seq1
Length=33300182
Score = 118 bits (130), Expect = 9e-22
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || ||||| ||||||| | || || || | ||
Sbjct 5269242 ATGCAGATCTTCGTTAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTCGAACCATCG 5269301
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 5269302 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5269357
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | || || || ||||| ||||| ||||||| ||| ||| || ||| ||
Sbjct 5269358 TCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGTCGTACTCTGTCCGACTA 5269417
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||| || ||||| || || || |||||
Sbjct 5269418 TAATATTCAAAAGGAGTCCACCCTGCACTTGGTGCT 5269453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327968312890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |